Hi, Can optseq2 converge on a solution when an event occurs only once?
I'm having difficulty fitting a single nuisance event into a design. In each experimental block, I have 9 trials of interest, and one rare event who's HRF is unimportant to me, but which needs to be separate from the NULL condition. For the trials of interest, I'd like to keep the ITI at 2-10 seconds, but, if need be, I'd be happy to have an ITI of 60 seconds for the nuisance event if would allow this to work. Any ideas would be greatly appreciate-- the following code fails to settle on a solution:
../../optseq2 --ntp 100 --tr 2 --cost eff --tprescan 0 --psdwin 0 18 1 --ev EV1 6 3 --ev EV2 7 3 --ev EV3 8 3 --ev Nuis 11 1 --tnullmin 0 --tnullmax 12 --nsearch 1000 --focb 1000 --nkeep 100 --o output --log log --polyfit 2
P.S. The mail list's search function doesn't work for me, so please forgive me if this has been covered in a previous thread!
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Dear FS experts,
I have a question to you:
After I defined a ROI in the brain and saved the overlay file in .nii format (the raw data is also .nii format), the ROI would be turned 180 degrees and displayed in contralateral hemisphere when I re-open the overlay file. Thus the measurement results would be wrong. Could you please tell me how to fix it?
Thanks,
Meiyun
Hi Meiyun, we'll need a lot more detail. HOw are you defining the ROI? In tkmedit or tksurfer? Saving as a label? How converting to nifti? What are you using to display the ROI?
doug
meiyun wang wrote:
Dear FS experts,
I have a question to you:
After I defined a ROI in the brain and saved the overlay file in .nii format (the raw data is also .nii format), the ROI would be turned 180 degrees and displayed in contralateral hemisphere when I re-open the overlay file. Thus the measurement results would be wrong. Could you please tell me how to fix it?
Thanks,
Meiyun
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
How did you define the ROI? On Thu, 14 Feb 2008, meiyun wang wrote:
Dear FS experts,
I have a question to you:
After I defined a ROI in the brain and saved the overlay file in .nii format (the raw data is also .nii format), the ROI would be turned 180 degrees and displayed in contralateral hemisphere when I re-open the overlay file. Thus the measurement results would be wrong. Could you please tell me how to fix it?
Thanks,
Meiyun
freesurfer@nmr.mgh.harvard.edu