Jenifer,

You can use the newer fsl with freesurfer. In fact, the fsl included with freesurfer is a subset of the whole fsl package, so it can be deleted. That is, do this:

cd $FREESURFER_HOME rm -Rf fsl (or mv it) ln -s /usr/local/fsl fsl

and then freesurfer will use your new fsl installation.

Nick

On Fri, 2007-11-16 at 10:37 -0600, Juranek, Jenifer wrote:

I’m considering downloading and installing fsl_v402 (centos4, 64 bit)

I currently have a stable freesurfer_v401 and MNE _v252 on the same workstation.

Should the destination directory of the fsl package overwrite the existing directory: /usr/local/freesurfer/fsl

Or should I maintain separate environments and install fsl in the fmrib’s recommended destination directory: /usr/local/fsl

Any advice is greatly appreciated…

Jenifer

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