Hi Vidhu,

After your standard recon-all, do:

mri_binarize --i yoursubjectname/mri/aseg.mgz --match 17 --o left_hip.nii mri_binarize --i yoursubjectname/mri/aseg.mgz--match 53 --o right_hip.nii

Hope that helps.

Best Wishes, Elijah

On Wed, Nov 1, 2017 at 5:57 AM, Vidhu Agrawal mail2vidhu.alld@gmail.com wrote:

Respected Sir,

How can i scoop out or separate only hippocampus from a 3D MRI of whole brain?

With regards vidhu agarwal

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