That could be the case. I start recon-all and just leave the computer for 24 hrs. Is there a way to find out what could be doing this.

Anil.

On 7/17/06, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:

is there some builtin time limit that you are exceeding? The log file just says:

mri_remove_neck -radius 25 nu.mgz transforms/talairach.m3z /usr/local/freesurf\ er/average/RB_all_2006-02-15.gca nu_noneck.mgz

erasing everything more than 25 mm from possible brain reading atlas '/usr/local/freesurfer/average/RB_all_2006-02-15.gca'... setting gca type = Normal gca type reading input volume 'nu.mgz'... reading transform 'transforms/talairach.m3z'... Killed Linux dhcp-129-105-146-221.speech.northwestern.edu 2.4.22-10mdk #1 Thu Sep 18 1\ 2:30:58 CEST 2003 i686 unknown unknown GNU/Linux

recon-all exited with ERRORS at Sat Jul 15 01:11:14 EDT 2006

which sounds like some other process killed this one.

Bruc

On Mon, 17 Jul 2006, Anil Roy wrote:

...

Hello All,

I've been running recon-all on a couple of minc brains on Fedora Core 4

and

...

everything thing runs fine. I started running a few on a Mandrake Linux 9.2system but each time recon-all exits with errors and I'm unable to see why. I've attached the recon-all.log file and would appreciate any input on

why

...

this is occurirng.

Thanks,

Anil Roy.