Dear Freesurfer's
I draw a roi to extract the cortical thickness for my two groups and that worked fine. Now I'm trying to export the very same roi to use it for further connectivity analysis. Can anyone please help me and tell me how to do it? Thanks in advance!! :-)
Cheers Jutta
Hi Jutta
we need more details - what format are you trying to conver the ROI to? What software are you planning to use to do the connectivity analysis?
cheers Bruce
On Thu, 8 May 2014, Jutta Ernst wrote:
Dear Freesurfer's
I draw a roi to extract the cortical thickness for my two groups and that worked fine. Now I'm trying to export the very same roi to use it for further connectivity analysis. Can anyone please help me and tell me how to do it? Thanks in advance!! :-)
Cheers Jutta
Hi
Nifti would be great and the software would be Data Processing Assistant for Resting-State fMRI (/DPARSF/).
Cheers, Jutta
On 05/08/2014 02:38 PM, Bruce Fischl wrote:
Hi Jutta
we need more details - what format are you trying to conver the ROI to? What software are you planning to use to do the connectivity analysis?
cheers Bruce
On Thu, 8 May 2014, Jutta Ernst wrote:
Dear Freesurfer's
I draw a roi to extract the cortical thickness for my two groups and that worked fine. Now I'm trying to export the very same roi to use it for further connectivity analysis. Can anyone please help me and tell me how to do it? Thanks in advance!! :-)
Cheers Jutta
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and what format is your ROI in? On Thu, 8 May 2014, Jutta Ernst wrote:
Hi
Nifti would be great and the software would be Data Processing Assistant for Resting-State fMRI (DPARSF).
Cheers, Jutta
On 05/08/2014 02:38 PM, Bruce Fischl wrote:
Hi Jutta
we need more details - what format are you trying to conver the ROI to? What software are you planning to use to do the connectivity analysis?
cheers Bruce
On Thu, 8 May 2014, Jutta Ernst wrote:
Dear Freesurfer's
I draw a roi to extract the cortical thickness for my two groups and that worked fine. Now I'm trying to export the very same roi to use it for further connectivity analysis. Can anyone please help me and tell me how to do it? Thanks in advance!! :-)
Cheers Jutta
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mai l contains patient information, please contact the Partners Compliance HelpLin e at http://www.partners.org/complianceline . If the e-mail was sent to you in er ror but does not contain patient information, please contact the sender and prop erly dispose of the e-mail.
It's a label file...
On 05/08/2014 02:56 PM, Bruce Fischl wrote:
and what format is your ROI in? On Thu, 8 May 2014, Jutta Ernst wrote:
Hi
Nifti would be great and the software would be Data Processing Assistant for Resting-State fMRI (DPARSF).
Cheers, Jutta
On 05/08/2014 02:38 PM, Bruce Fischl wrote:
Hi Jutta
we need more details - what format are you trying to conver the ROI to? What software are you planning to use to do the connectivity analysis?
cheers Bruce
On Thu, 8 May 2014, Jutta Ernst wrote:
Dear Freesurfer's
I draw a roi to extract the cortical thickness for my two groups and that worked fine. Now I'm trying to export the very same roi to use it for further connectivity analysis. Can anyone please help me and tell me how to do it? Thanks in advance!! :-)
Cheers Jutta
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mai l contains patient information, please contact the Partners Compliance HelpLin e at http://www.partners.org/complianceline . If the e-mail was sent to you in er ror but does not contain patient information, please contact the sender and prop erly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
then you probably want to use mri_label2vol to sample it into the volume. If the output name has the extension .nii it will be in nifti format
cheers Bruce
On Thu, 8 May 2014, Jutta Ernst wrote:
It's a label file...
On 05/08/2014 02:56 PM, Bruce Fischl wrote:
and what format is your ROI in? On Thu, 8 May 2014, Jutta Ernst wrote:
Hi
Nifti would be great and the software would be Data Processing Assistant for Resting-State fMRI (DPARSF).
Cheers, Jutta
On 05/08/2014 02:38 PM, Bruce Fischl wrote:
Hi Jutta
we need more details - what format are you trying to conver the ROI to? What software are you planning to use to do the connectivity analysis?
cheers Bruce
On Thu, 8 May 2014, Jutta Ernst wrote:
Dear Freesurfer's
I draw a roi to extract the cortical thickness for my two groups and that worked fine. Now I'm trying to export the very same roi to use it for further connectivity analysis. Can anyone please help me and tell me how to do it? Thanks in advance!! :-)
Cheers Jutta
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mai l contains patient information, please contact the Partners Compliance HelpLin e at http://www.partners.org/complianceline . If the e-mail was sent to you in er ror but does not contain patient information, please contact the sender and prop erly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Thank you, that solved it :-)cheers
Am 08.05.2014 um 15:56 schrieb Bruce Fischl fischl@nmr.mgh.harvard.edu:
then you probably want to use mri_label2vol to sample it into the volume. If the output name has the extension .nii it will be in nifti format
cheers Bruce
On Thu, 8 May 2014, Jutta Ernst wrote:
It's a label file...
On 05/08/2014 02:56 PM, Bruce Fischl wrote: and what format is your ROI in?
On Thu, 8 May 2014, Jutta Ernst wrote:
Hi
Nifti would be great and the software would be Data Processing Assistant for Resting-State fMRI (DPARSF).
Cheers, Jutta
On 05/08/2014 02:38 PM, Bruce Fischl wrote:
Hi Jutta
we need more details - what format are you trying to conver the ROI to? What software are you planning to use to do the connectivity analysis?
cheers Bruce
On Thu, 8 May 2014, Jutta Ernst wrote:
Dear Freesurfer's
I draw a roi to extract the cortical thickness for my two groups and that worked fine. Now I'm trying to export the very same roi to use it for further connectivity analysis. Can anyone please help me and tell me how to do it? Thanks in advance!! :-)
Cheers Jutta
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mai l contains patient information, please contact the Partners Compliance HelpLin e at http://www.partners.org/complianceline . If the e-mail was sent to you in er ror but does not contain patient information, please contact the sender and prop erly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
This is a very vague request. What kind of connectivity analysis? fMRI or DTI? What software are you using?
On 05/08/2014 05:43 AM, Jutta Ernst wrote:
Dear Freesurfer's
I draw a roi to extract the cortical thickness for my two groups and that worked fine. Now I'm trying to export the very same roi to use it for further connectivity analysis. Can anyone please help me and tell me how to do it? Thanks in advance!! :-)
Cheers Jutta
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Sorry, I was going through "old" emails and did not see this had already been addressed. Please ignore, which I'm sure most of you were doing anyway :-)
On 05/13/2014 01:37 PM, Douglas N Greve wrote:
This is a very vague request. What kind of connectivity analysis? fMRI or DTI? What software are you using?
On 05/08/2014 05:43 AM, Jutta Ernst wrote:
Dear Freesurfer's
I draw a roi to extract the cortical thickness for my two groups and that worked fine. Now I'm trying to export the very same roi to use it for further connectivity analysis. Can anyone please help me and tell me how to do it? Thanks in advance!! :-)
Cheers Jutta
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Douglas N Greve -
Jutta Ernst