Hello,
I'm analyzing some images of patients with TBI. There's one of them having abnormalities in T1 images (skull fracture, epidural/intracranial hemorrhage, shifts) that can trouble image registration; when I run recon-all for this patient, it exits with errors. I wonder if it has anything to do with the abnormalities troubling the registration of T1 images. I've attached the log file, and some axial sections of the T1 images can be viewed here:
https://drive.google.com/folderview?id=0B4AFmHFjy_bsbkotd2QyZjZ6dW8&usp=...
Thank you and Merry Christmas!
Emad
freesurfer@nmr.mgh.harvard.edu