Hi John,

So you've been able to run some subjects successfully through the subfield stream? Can you provide some more information like freesurfer version/buildstamp (run the command ‘bugr') as well as your operating system and version?

thanks, Andrew

On Nov 13, 2017, at 7:36 AM, John Papatriantafyllou <epiktitos@gmail.commailto:epiktitos@gmail.com> wrote:

dear Eugenio, i get the massage randomly after processing 10-15 patients' mri. And this is only for the subfields. I run them under the same platform. John

On Mon, Nov 13, 2017 at 10:45 AM, Iglesias Gonzalez, Eugenio <e.iglesias@ucl.ac.ukmailto:e.iglesias@ucl.ac.uk> wrote: Dear John, This looks like a library error. You’re saying that you only get it with some subjects? Are you running them all on the same platform? Cheers, /Eugenio

-- Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.comhttp://www.jeiglesias.com/ http://cmictig.cs.ucl.ac.uk/

From: <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of John Papatriantafyllou <epiktitos@gmail.commailto:epiktitos@gmail.com> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Date: Sunday, 12 November 2017 at 19:41 To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] error hipp subfields

dear Fs experts i have the whole process to get the hipp subfields. But after some mr's that are processed well i get an error (attachment) I have to do the whole process from the beggining And so on Is there an answer? John

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Hi John, I’ve tried to replicate this issue with no success. I’m still a bit confused as to when this errors occurs - are some subjects able to run successfully? Is it subject-dependent or is there no clear pattern? It’s possible that the matlab libraries have been corrupted, so one option would be to try to reinstall freesurfer (or neurodebian). Do you mind sending the output of “ldd /usr/local/freesurfer/stable/MCRv80/bin/glnxa64/libmwmclmcr.so”?

thanks, Andrew

On Nov 13, 2017, at 4:09 PM, John Papatriantafyllou <epiktitos@gmail.commailto:epiktitos@gmail.com> wrote:

Hi yes, i can run some subjects and suddenly i get an error. Actually today i got another kind of error (attach) And all this only for Hip subfields. I run fs 6 under neurodebian 8.00 (64b) through virtual box on an i7, 32gb ram machine and windows 10. I have an identical machine with same verification and there is not any problem. John

On Mon, Nov 13, 2017 at 9:07 PM, Hoopes, Andrew <AHOOPES@mgh.harvard.edumailto:AHOOPES@mgh.harvard.edu> wrote: Hi John,

So you've been able to run some subjects successfully through the subfield stream? Can you provide some more information like freesurfer version/buildstamp (run the command ‘bugr') as well as your operating system and version?

thanks, Andrew

On Nov 13, 2017, at 7:36 AM, John Papatriantafyllou <epiktitos@gmail.commailto:epiktitos@gmail.com> wrote:

dear Eugenio, i get the massage randomly after processing 10-15 patients' mri. And this is only for the subfields. I run them under the same platform. John

On Mon, Nov 13, 2017 at 10:45 AM, Iglesias Gonzalez, Eugenio <e.iglesias@ucl.ac.ukmailto:e.iglesias@ucl.ac.uk> wrote: Dear John, This looks like a library error. You’re saying that you only get it with some subjects? Are you running them all on the same platform? Cheers, /Eugenio

-- Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.comhttp://www.jeiglesias.com/ http://cmictig.cs.ucl.ac.uk/

From: <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of John Papatriantafyllou <epiktitos@gmail.commailto:epiktitos@gmail.com> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Date: Sunday, 12 November 2017 at 19:41 To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] error hipp subfields

dear Fs experts i have the whole process to get the hipp subfields. But after some mr's that are processed well i get an error (attachment) I have to do the whole process from the beggining And so on Is there an answer? John

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The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

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