Hi,
I am attempting to view single anatomical ROI (say Right-Hippocampus) overlaid on MRI image using freeview.How can I achieve this?
you can use mri_extract_label on the aseg.mgz to pull out just the label you want, then load it and the MRI into freeview (if that is what you mean)
cheers Bruce On Fri, 13 Apr 2018, Srinivasan, Dhivya wrote:
Hi,
I am attempting to view single anatomical ROI (say Right-Hippocampus) overlaid on MRI image using freeview.How can I achieve this?
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Or simply uncheck every item in the look up table except the one you want to show.
On Apr 13, 2018, at 5:15 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
you can use mri_extract_label on the aseg.mgz to pull out just the label you want, then load it and the MRI into freeview (if that is what you mean)
cheers Bruce On Fri, 13 Apr 2018, Srinivasan, Dhivya wrote:
Hi,
I am attempting to view single anatomical ROI (say Right-Hippocampus) overlaid on MRI image using freeview.How can I achieve this?
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
BTW, that only applies to the dev version.
Ruopeng
On Apr 13, 2018, at 5:18 PM, Ruopeng Wang rpwang@nmr.mgh.harvard.edu wrote:
Or simply uncheck every item in the look up table except the one you want to show.
On Apr 13, 2018, at 5:15 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
you can use mri_extract_label on the aseg.mgz to pull out just the label you want, then load it and the MRI into freeview (if that is what you mean)
cheers Bruce On Fri, 13 Apr 2018, Srinivasan, Dhivya wrote:
Hi,
I am attempting to view single anatomical ROI (say Right-Hippocampus) overlaid on MRI image using freeview.How can I achieve this?
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
There is also an "All" button that if you uncheck will uncheck all of them; then you can go check the one(s) you want
On 4/13/18 5:22 PM, Ruopeng Wang wrote:
BTW, that only applies to the dev version.
Ruopeng
On Apr 13, 2018, at 5:18 PM, Ruopeng Wang rpwang@nmr.mgh.harvard.edu wrote:
Or simply uncheck every item in the look up table except the one you want to show.
On Apr 13, 2018, at 5:15 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
you can use mri_extract_label on the aseg.mgz to pull out just the label you want, then load it and the MRI into freeview (if that is what you mean)
cheers Bruce On Fri, 13 Apr 2018, Srinivasan, Dhivya wrote:
Hi,
I am attempting to view single anatomical ROI (say Right-Hippocampus) overlaid on MRI image using freeview.How can I achieve this?
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Douglas Greve -
Ruopeng Wang -
Srinivasan, Dhivya