You need to install afni. It used to be that we distributed afni with freesurfer but we dont any more.

http://afni.nimh.nih.gov/afni

doug

Olivier Piguet wrote:

Good morning,

I recently installed the new version of FreeSurfer and have been re-familiarising myself with the steps/procedures. I followed the FreeSurfer and FsFast tutorial which went fine until I tried the step described in the FsFastTutorial/700: Motion correct the data. When I ran the command:

mc-sess -sf sessid -df sesspar

I received the following error message:

Logfile is /home/olivierp/BERT_TUTORIAL_ANALYSES/log/mc-bert-functional-bold.log

---

/home/olivierp/FreeSurfer_tutorial/bert-functional RunList: 007 008 009 Targ Stem is 007/f ------- ************************** ----------- ------- Motion Correcting Run 007 ----------- ------- ************************** ----------- sess = bert-functional Fri May 26 08:27:34 EST 2006 mc-afni -i 007/f -o 007/fmc -t 007/f -toff 0 -ipr 3.12500000000000000000 -bpr 6. 00000007484366104649 -TR 2 ERROR: cannot find AFNI command to3d

Any help/suggestion on how to solve this problem would be greatly appreciated.

Olivier Piguet

--

Olivier Piguet, Ph.D.

Prince of Wales Medical Research Institute

Barker St

Randwick NSW 2031

Australia

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