Hello,
I am visually checking wm.mgz after running recon-all. There seems to be a pattern where I'm seeing white matter "bleed" past the (correct) white matter surface and into gray matter or appear in the sagittal sinus/dura. However, when I look at wmparc.mgz, the problem is no longer there and the white/gray matter is correctly segmented. Even if the wmparc volume is correct, do I need to do white matter edits?
Thanks, Elle
nope, that's why we usually trust the surfaces more than the volume segmentations.
cheers Bruce On Wed, 26 Mar 2014, Eleanor Stahura wrote:
Hello, I am visually checking wm.mgz after running recon-all. There seems to be a pattern where I'm seeing white matter "bleed" past the (correct) white matter surface and into gray matter or appear in the sagittal sinus/dura. However, when I look at wmparc.mgz, the problem is no longer there and the white/gray matter is correctly segmented. Even if the wmparc volume is correct, do I need to do white matter edits?
Thanks, Elle
freesurfer@nmr.mgh.harvard.edu