Thanks Doug that worked great!

________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Tuesday, March 01, 2016 15:33 To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Map label from lh to rh

It does not. You can run mris_left_right_register. You will need to use mris_apply_reg instead of mri_label2label. See below. run with --help to get docs

ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mris_apply_reg

On 02/25/2016 04:28 PM, Makaretz, Sara Johanna wrote:

Hi, I want to map a label from one hemi to the other (all on fsaverage). I tried mri_label2label:

mri_label2label --s fsaverage --srchemi lh --trghemi rh --srclabel lh.a.label --trglabel rh.flipped_lh.a.label --regmethod surface

but I think I need to specify a reg file to go between hemispheres, does this exist somewhere? an error message kindly pointed out that this one does not exist: /usr/local/freesurfer/stable5_3_0/subjects/fsaverage/surf/rh.lh.sphere.reg

---

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-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422

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