Julia, what version of FS are you using? It looks like pre-5.0. Can you upgrade to 5.1? There were a lot of changes in going from 4 to 5, and it is becoming increasingly hard to support version 4.

doug

On 12/06/2012 02:45 AM, Julia Foecker wrote:

thanks. attached the info file.

When I run the surf-sess command after that, it shows the functional on a surface (see attached but the values at the occip regions show "inf." (see figure 1 attached). Moreover, when I try to load the occipital patch it shows me the attached file (fig.3) and I cannot use the command -> configure -> overlay to change settings.

I have used fake ecc. runs (I have recorded only polar runs).

Would you have any further suggestions? Thanks, Julia

On Wed, 05 Dec 2012 17:03:31 -0500 Douglas N Greve greve@nmr.mgh.harvard.edu wrote

...

It should automatically detect that this was a retinotopy analysis and then load the polar and eccen. Was this configured as a retinotopy analysis? Can you send me the

$ANALYSIS_PHASE/analysis.info file?

doug

On 12/05/2012 04:12 PM, Julia Foecker wrote:

...

Hi Doug,

I tried now several ways to get the maps on the surface:

1. When I am deleting -retinotopy flag and type in:

...

...

tksurfer-sess -debug -s $SESSIONNAME -hemi lh -d $SESSIONDIRECTORY -analysis $ANALYSIS_PHASE

I got the message:no contrast has been specified

(I do not have any contrasts in the analysis, just use polar angle maps)

2. I tried to use the commands on the website you referred to, but I do not

have -surface in the preproc-sess (see attached) The other commands depend on this preproc-sess command.

3. I tried the following command

paint-sess -s $SESSIONNAME -d $SESSIONDIRECTORY -analysis $ANALYSIS_PHASE

and I got the errors listed below...

I am not sure how to procede. Would you have any further suggestions? Many thanks, Julia

Thanks, Julia

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