I'm having problems with the output of recon-all -autorecon2. proceeding down the recon-all dev table, I checked the outputs of each step. everything looks good until aseg.auto.mgz everything after has problems. What kind of manual intervention do I need to do for this?
-Tom
Hi Tom,
We're going to need a little more info. Did autorecon2 finish? Did it fail part way through? When you say everything has problems, what kind of problems?
go here to see the types of information we need in order to best help you: https://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
thanks,
freesurfer@nmr.mgh.harvard.edu