I actually didn't change any of the parameters for this patient- not the dicoms or headers, just put the dicoms as they were through the freesurfer stream. I can send you all the possible sequences I could have used from the MR? I think that this was an mprage, so I thought it would work.

Thanks so much, Mia ________________________________________ From: Nick Schmansky [nicks@nmr.mgh.harvard.edu] Sent: Tuesday, May 14, 2013 4:57 PM To: Borzello, Mia Cc: freesurfer Subject: Re: [Freesurfer] Recon-all error

Mia,

Hi, in looking at the mri/orig/001.mgz, the image in the sagital and coronal planes look inverted. also, i noticed this mri_info:

dimensions: 566 x 256 x 992 voxel sizes: 1.0000, 1.0000, 1.0000

which seems like unusual input. how was this converted from the dicom? did it necessitate altering the header?

Nick

On Tue, 2013-05-14 at 20:23 +0000, Borzello, Mia wrote:

Hi freesurfers,

I recently ran a reconstruction, but it's errored. I'm not sure why thought, but I've attached the recon log.

Thanks,

Mia

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