External Email - Use Caution
It looks like /tmp is running out of space (which can be a separate partition much smaller than the boot partition) to the point where the matlab installer cannot use it. You can check that with, $ cd /tmp$ df -h . You should be able to delete anything under /tmp as nothing permanent should be written there. - R. On Jul 9, 2024, at 04:02, Himanshu Joshi <anshuhim20@gmail.com> wrote: External Email - Use Caution Dear list,I am trying to install matlab runtime environment (MCR) in $FREESURFER_HOME/freesurfer by using fs_install_mcr R2019b. the error is mentioned below: (Jul 09, 2024 12:00:11) The following error was detected while installing 3p/mpich2_glnxa64:
/tmp/tmp.YZJEtKG8O6/install-target/v97/bin/glnxa64/smpd (No space left on device)
Would you like to retry installing 3p/mpich2_glnxa64? If you press No, the installer will exit without completing the installation. More information can be found at /tmp/mathworks_MBIAL.log (Jul 09, 2024 12:00:11) Exiting with status -1 (Jul 09, 2024 12:00:11) End - Unsuccessful. Finished R2019b installed successfully in /home/MBIAL/freesurfer/MCRv97
We have enough space on / filesystem: Filesystem Size Used Avail Use% Mounted on /dev/mapper/rhel-root 50G 43G 7.4G 86% / devtmpfs 252G 0 252G 0% /dev tmpfs 252G 21M 252G 1% /dev/shm tmpfs 252G 19M 252G 1% /run tmpfs 252G 0 252G 0% /sys/fs/cgroup /dev/sda2 497M 219M 279M 44% /boot /dev/mapper/rhel-home 3.3T 2.3T 961G 71% /home tmpfs 51G 48K 51G 1% /run/user/1003
Kindly suggest the needful Thanks and Regards -- Dr Himanshu Joshi _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Dear -R Thankyou for your response. (base) [XXXX-XXXX-XXXX ~]$ cd /tmp (base) [XXXX-XXXX-XXXX tmp]$ df -h . Filesystem Size Used Avail Use% Mounted on */dev/mapper/rhel-root 50G 43G 7.4G 86% /*
As per your suggestion we have deleted multiple files in /tmp please find below the output of tmp]$ sudo du -a [sudo] password for XXXX-XXXX: 0 ./.ICE-unix/20982 0 ./.ICE-unix/29568 0 ./.ICE-unix/19226 0 ./.ICE-unix/19713 0 ./.ICE-unix/19234 0 ./.ICE-unix/19967 0 ./.ICE-unix 0 ./.Test-unix 0 ./.font-unix 0 ./.X11-unix/X0 0 ./.X11-unix 0 ./.XIM-unix 0 ./systemd-private-8275746e5d6b4542bb83f3b97150b781-colord.service-ssvzdw/tmp 0 ./systemd-private-8275746e5d6b4542bb83f3b97150b781-colord.service-ssvzdw 4 ./yum_save_tx.2024-07-04.11-59.6QHKSE.yumtx 0 ./systemd-private-383d8beca3f9487c87e4427e19fd7256-colord.service-HtLZ8s/tmp 0 ./systemd-private-383d8beca3f9487c87e4427e19fd7256-colord.service-HtLZ8s 0 ./systemd-private-383d8beca3f9487c87e4427e19fd7256-rtkit-daemon.service-W9zxj8/tmp 0 ./systemd-private-383d8beca3f9487c87e4427e19fd7256-rtkit-daemon.service-W9zxj8 0 ./systemd-private-8275746e5d6b4542bb83f3b97150b781-chronyd.service-Rm3N8t/tmp 0 ./systemd-private-8275746e5d6b4542bb83f3b97150b781-chronyd.service-Rm3N8t 0 ./.esd-1003/socket 0 ./.esd-1003 4 ./.X0-lock 0 ./systemd-private-8275746e5d6b4542bb83f3b97150b781-bolt.service-CGDUJW/tmp 0 ./systemd-private-8275746e5d6b4542bb83f3b97150b781-bolt.service-CGDUJW 4 ./yum_save_tx.2024-07-04.11-21.7y6gFH.yumtx 0 ./systemd-private-8275746e5d6b4542bb83f3b97150b781-fprintd.service-EozS2b/tmp 0 ./systemd-private-8275746e5d6b4542bb83f3b97150b781-fprintd.service-EozS2b 0 ./hsperfdata_MBIAL 0 ./systemd-private-8275746e5d6b4542bb83f3b97150b781-fwupd.service-xsxdcF/tmp 0 ./systemd-private-8275746e5d6b4542bb83f3b97150b781-fwupd.service-xsxdcF 4 ./yum_save_tx.2024-07-04.06-17.SHMEhK.yumtx 0 ./systemd-private-8275746e5d6b4542bb83f3b97150b781-rtkit-daemon.service-D6jRPY/tmp 0 ./systemd-private-8275746e5d6b4542bb83f3b97150b781-rtkit-daemon.service-D6jRPY 4 ./yum_save_tx.2024-07-04.11-38.mlSqY5.yumtx 0 ./systemd-private-383d8beca3f9487c87e4427e19fd7256-chronyd.service-2TAXFe/tmp 0 ./systemd-private-383d8beca3f9487c87e4427e19fd7256-chronyd.service-2TAXFe 0 ./systemd-private-383d8beca3f9487c87e4427e19fd7256-bolt.service-PPXDHj/tmp 0 ./systemd-private-383d8beca3f9487c87e4427e19fd7256-bolt.service-PPXDHj 0 ./systemd-private-383d8beca3f9487c87e4427e19fd7256-fwupd.service-Rnn6To/tmp 0 ./systemd-private-383d8beca3f9487c87e4427e19fd7256-fwupd.service-Rnn6To 32 .
We have deleted MCRv97 from $FREESURFER_HOME/freesurfer and again tried installing using fs_install_mcr R2019b. the same error appeared again as shown below:
(Jul 09, 2024 17:57:14) The following error was detected while installing 3p/mpich2_glnxa64:
/tmp/tmp.jTM7f403r0/install-target/v97/bin/glnxa64/smpd (No space left on device)
Would you like to retry installing 3p/mpich2_glnxa64? If you press No, the installer will exit without completing the installation. More information can be found at /tmp/mathworks_XXXX.log (Jul 09, 2024 17:57:14) Exiting with status -1 (Jul 09, 2024 17:57:14) End - Unsuccessful. Finished R2019b installed successfully in /home/MBIAL/freesurfer/MCRv97 mathworks_XXXX.log is attached for your review
Kindly advice on how to proceed with MCR installation.
Thanking you in advance
On Tue, Jul 9, 2024 at 3:45 PM fsbuild fsbuild@contbay.com wrote:
It looks like /tmp is running out of space (which can be a separate partition much smaller than the boot partition) to the point where the matlab installer cannot use it. You can check that with,
$ cd /tmp $ df -h .
You should be able to delete anything under /tmp as nothing permanent should be written there.
- R.
On Jul 9, 2024, at 04:02, Himanshu Joshi anshuhim20@gmail.com wrote:
External Email - Use CautionDear list, I am trying to install matlab runtime environment (MCR) in $FREESURFER_HOME/freesurfer by using *fs_install_mcr R2019b*. the error is mentioned below: (Jul 09, 2024 12:00:11) The following error was detected while installing
*3p/mpich2_glnxa64:/tmp/tmp.YZJEtKG8O6/install-target/v97/bin/glnxa64/smpd (No space left on device)* Would you like to retry installing 3p/mpich2_glnxa64? If you press No, the installer will exit without completing the installation. More information can be found at /tmp/mathworks_MBIAL.log (Jul 09, 2024 12:00:11) Exiting with status -1 (Jul 09, 2024 12:00:11) End - Unsuccessful. Finished R2019b installed successfully in /home/MBIAL/freesurfer/MCRv97
We have enough space on / filesystem: Filesystem Size Used Avail Use% Mounted on /dev/mapper/rhel-root 50G 43G 7.4G 86% / devtmpfs 252G 0 252G 0% /dev tmpfs 252G 21M 252G 1% /dev/shm tmpfs 252G 19M 252G 1% /run tmpfs 252G 0 252G 0% /sys/fs/cgroup /dev/sda2 497M 219M 279M 44% /boot /dev/mapper/rhel-home 3..3T 2.3T 961G 71% /home tmpfs 51G 48K 51G 1% /run/user/1003
Kindly suggest the needful
Thanks and Regards
Dr Himanshu Joshi
Freesurfer mailing list Freesurfer@nmr.mgh..harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
fsbuild -
Himanshu Joshi