Dear FreeSurfer experts,
I am trying to view the Feat on volume and surface by following commands:
tkmedit bert orig.mgz -aux brain.mgz -overlay ./fbert1.feat/stats/zstat1.nii.gz -overlay-reg ./fbert1.feat/reg/freesurfer/anat2exf.register.dat -fthresh 2.3 –fmax 4.3 -seg aparc+aseg.mgz
and
tksurfer bert rh inflated -overlay ./fbert1.feat/stats/zstat1.nii.gz -overlay-reg ./fbert1.feat/reg/freesurfer/anat2exf.register.dat -fthresh 2.3 -fmid 3.3 -fslope 1
it works but thats my question:
Is it possible to do the same thing with freeview ? I can not convert above commands in a way which be meaningful for freeview.
many thanks to any help you can provide me.
BRG, Nazanin
Use tkmeditfv and tksurferfv and it will bring up freeview instead.
On 12/26/17 4:17 AM, N Saf wrote:
Dear FreeSurfer experts,
I am trying to view the Feat on volume and surface by following commands:
tkmedit bert orig.mgz -aux brain.mgz -overlay ./fbert1.feat/stats/zstat1.nii.gz -overlay-reg ./fbert1.feat/reg/freesurfer/anat2exf.register.dat -fthresh 2.3 –fmax 4.3 -seg aparc+aseg.mgz
and
tksurfer bert rh inflated -overlay ./fbert1.feat/stats/zstat1.nii.gz -overlay-reg ./fbert1.feat/reg/freesurfer/anat2exf.register.dat -fthresh 2.3 -fmid 3.3 -fslope 1
it works but thats my question:
Is it possible to do the same thing with freeview ? I can not convert above commands in a way which be meaningful for freeview.
many thanks to any help you can provide me.
BRG, Nazanin
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
thank you indeed.
On Mon, Jan 1, 2018 at 1:50 AM, Douglas Greve greve@nmr.mgh.harvard.edu wrote:
Use tkmeditfv and tksurferfv and it will bring up freeview instead.
On 12/26/17 4:17 AM, N Saf wrote:
Dear FreeSurfer experts,
I am trying to view the Feat on volume and surface by following commands:
tkmedit bert orig.mgz -aux brain.mgz -overlay ./fbert1.feat/stats/zstat1.nii.gz -overlay-reg ./fbert1.feat/reg/freesurfer/anat2exf.register.dat -fthresh 2.3 –fmax 4.3 -seg aparc+aseg.mgz
and
tksurfer bert rh inflated -overlay ./fbert1.feat/stats/zstat1.nii.gz -overlay-reg ./fbert1.feat/reg/freesurfer/anat2exf.register.dat -fthresh 2.3 -fmid 3.3 -fslope 1
it works but thats my question:
Is it possible to do the same thing with freeview ? I can not convert above commands in a way which be meaningful for freeview.
many thanks to any help you can provide me.
BRG, Nazanin
Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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freesurfer@nmr.mgh.harvard.edu