To mimic the original matlab implementation, segment_subregions saves stats as *.txt files in the mri subdirectory of the subject.

But maybe we should just save things in the stats folder to be consistent. Eugenio/Doug, what do you think?

Andrew

From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Alvarado, Luis luis.alvarado@louisville.edu Date: Monday, July 18, 2022 at 4:11 AM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] segment_subregions stats files missing?

External Email - Use Caution Hi all,

I ran the segment_subregions thalamus --cross on some of my subjects but I cannot find the *.stats files in the stats folder. I was wondering if I am missing something?

I need the *.stats files to aggregate the results via asegstats2table to feed the mri_glmfit tool. Is there another way to do this without the *.stats files?

I am using the freesurfer-linux-ubuntu20_x86_64-dev-20220716-015eeb0 build on Ubuntu 20.04.4 LTS.

Best,

Luis