Hi avi:
Thanks for your response, attachments are my recon-all.logs. If you have any ideas,please let me know.
Thanks again.
2009/4/17 Avi Snyder avi@npg.wustl.edu
Zonglei,
Send the log file to
avi@npg.wustl.edu
Date: Fri, 17 Apr 2009 11:15:19 -0400 (EDT) From: Bruce Fischl fischl@nmr.mgh.harvard.edu To: Avi Snyder avi@npg.wustl.edu cc: nicks@nmr.mgh.harvard.edu
do you want to contact him directly?
On Fri, 17 Apr 2009, Avi Snyder wrote:
Most likely the MPRAGE->atlas computation aborted without creating the relevant t4 file (ASCII representation of the affine transform). This could occur if the images were somehow corrupted.
Alternatively, the t4 file is present but a recent OS upgrade has caused the previously compiled t4_read FORTRAN function to bomb. I have seen
this case
once before and have therefore created an all-C t4 i/o module.
We can distinguish these cases by asking if you got a core dump, of if a t4 file is still present. The complete tal transform log file would be diagnostically very helpful.
Avi
Date: Fri, 17 Apr 2009 07:58:36 -0400 (EDT) From: Bruce Fischl fischl@nmr.mgh.harvard.edu To: Avi Snyder avi@npg.wustl.edu cc: Nick Schmansky nicks@nmr.mgh.harvard.edu Subject: [Freesurfer] t4_read error (fwd)
Hi Avi,
do you know what this message means?
thanks Bruce
---------- Forwarded message ---------- Date: Fri, 17 Apr 2009 19:32:05 +0800 From: Zhen Zonglei zonglei.fsl@gmail.com To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] t4_read error
Dear all: Recon-all has finished without error in my reconstruction. However,
when I
checked recon-all.log, I found three was a error “t4_read: talsrcimg_to_711-2C_as_mni_average_305_t4 read error”.
What’s this error mean? Does it have some effects on my reconstruction?
Thanks
-- Zonglei Zhen, PhD Assistant Professor of Cognitive Neuroscience BNU Imaging Center for Brain Research, State Key Laboratory of
Cognitive
Neuroscience and Learning, P.R. China
freesurfer@nmr.mgh.harvard.edu
-
Zhen Zonglei