External Email - Use Caution
Thank you for all of the work of the FreeSurfer team in continuing to make advances to the Freesurfer suite of tools. I wondered if you could comment on (a) any work or plans to include hippocampal subfield, brainstem subfield, or corpus callosum subfield segmentations, and (b) the robustness of SynthSEG to defacing/refacing software as compared to Freesurfer? Thanks very much.
Dear Dawn, Integrating the hippocampal subfields into SynthSeg in on the to-do list, but it’s tricky due to differences in resolution. In terms of robustness, we are making progress – but I like your suggestion of adding defacing to the list of “artifacts”! We’ll take it into consideration 😊 Cheers, /Eugenio
-- Juan Eugenio Iglesias http://www.jeiglesias.com
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Dawn Matthews dmatthews@admdx.com Date: Sunday, October 29, 2023 at 1:18 PM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] SynthSEG continued developments
External Email - Use Caution Thank you for all of the work of the FreeSurfer team in continuing to make advances to the Freesurfer suite of tools. I wondered if you could comment on (a) any work or plans to include hippocampal subfield, brainstem subfield, or corpus callosum subfield segmentations, and (b) the robustness of SynthSEG to defacing/refacing software as compared to Freesurfer? Thanks very much.
My experience is that it is extremely robust with respect to defacing (and even skull stripping).
On 10/30/2023 12:02 PM, Iglesias Gonzalez, Juan E. wrote:
Dear Dawn,
Integrating the hippocampal subfields into SynthSeg in on the to-do list, but it’s tricky due to differences in resolution.
In terms of robustness, we are making progress – but I like your suggestion of adding defacing to the list of “artifacts”! We’ll take it into consideration 😊
Cheers,
/Eugenio
--
Juan Eugenio Iglesias
*From: *freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Dawn Matthews dmatthews@admdx.com *Date: *Sunday, October 29, 2023 at 1:18 PM *To: *freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu *Subject: *[Freesurfer] SynthSEG continued developments
* External Email - Use Caution *
Thank you for all of the work of the FreeSurfer team in continuing to make advances to the Freesurfer suite of tools. I wondered if you could comment on (a) any work or plans to include hippocampal subfield, brainstem subfield, or corpus callosum subfield segmentations, and (b) the robustness of SynthSEG to defacing/refacing software as compared to Freesurfer? Thanks very much.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Dawn Matthews -
Douglas N. Greve -
Iglesias Gonzalez, Juan E.