Dear freesurfer community I have used the freesurfer v5.30 stable on linux, I want to fusion the CT image and the MRI T1 image. The CT image was signed form the epilepsy patient after the inserted depth electrode surgery. The MR image was sign before the operation. I tried to register them by the "bbregister" or "mri_robust_register" , but it didn't work good. And I had seen the website page " https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2016-June/046081.html" , does the "mri_coreg" is the better instruction to use in my case?
And, I found that I can't find the download link of freesurfer v6.0 in your website, and the link " ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_coreg.mac " is invalid to use.
I really appreciate any help here
HsinTsung Lee
Hi HsinTsung
FreeSurfer V6 isn't out yet, but we are moving towards having a beta. I'll leave the registration questions for Doug cheers Bruce
On Mon, 3 Oct 2016, Hsin-Tsung Lee wrote:
Dear freesurfer community I have used the freesurfer v5.30 stable on linux, I want to fusion the CT image and the MRI T1 image. The CT image was signed form the epilepsy patient after the inserted depth electrode surgery. The MR image was sign before the operation. I tried to register them by the "bbregister" or "mri_robust_register" , but it didn't work good. And I had seen the website page"https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2016-June/046081.ht ml" , does the "mri_coreg" is the better instruction to use in my case?
And, I found that I can't find the download link of freesurfer v6.0 in your website, and the link " ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_coreg.mac
" is invalid to use.
I really appreciate any help here
HsinTsung Lee
Dear Dr. Bruce I have one more question, does the "mri_coreg" available in version 5.30 stable, or it only available in v6.0(or it's beta version)?
Best Regard
HsinTsung Lee
2016-10-03 21:30 GMT+08:00 Bruce Fischl fischl@nmr.mgh.harvard.edu:
Hi HsinTsung
FreeSurfer V6 isn't out yet, but we are moving towards having a beta. I'll leave the registration questions for Doug cheers Bruce
On Mon, 3 Oct 2016, Hsin-Tsung Lee wrote:
Dear freesurfer community I have used the freesurfer v5.30 stable on linux, I want to fusion the CT image and the MRI T1 image. The CT image was signed form the epilepsy patient after the inserted depth electrode surgery. The MR image was sign before the operation. I tried to register them by the "bbregister" or "mri_robust_register" , but it didn't work good. And I had seen the website page"https://mail.nmr.mgh.harv ard.edu/pipermail//freesurfer/2016-June/046081.ht ml" , does the "mri_coreg" is the better instruction to use in my case?
And, I found that I can't find the download link of freesurfer v6.0 in your website, and the link " ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/grev e/mri_coreg.mac
" is invalid to use.
I really appreciate any help here
HsinTsung Lee
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
you can get it from here
https://gate.nmr.mgh.harvard.edu/safelinks/greve/mri_coreg
On 10/03/2016 12:46 PM, Hsin-Tsung Lee wrote:
Dear Dr. Bruce I have one more question, does the "mri_coreg" available in version 5.30 stable, or it only available in v6.0(or it's beta version)?
Best Regard
HsinTsung Lee
2016-10-03 21:30 GMT+08:00 Bruce Fischl <fischl@nmr.mgh.harvard.edu mailto:fischl@nmr.mgh.harvard.edu>:
Hi HsinTsung FreeSurfer V6 isn't out yet, but we are moving towards having a beta. I'll leave the registration questions for Doug cheers Bruce On Mon, 3 Oct 2016, Hsin-Tsung Lee wrote: Dear freesurfer community I have used the freesurfer v5.30 stable on linux, I want to fusion the CT image and the MRI T1 image. The CT image was signed form the epilepsy patient after the inserted depth electrode surgery. The MR image was sign before the operation. I tried to register them by the "bbregister" or "mri_robust_register" , but it didn't work good. And I had seen the website page"https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2016-June/046081.ht <https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2016-June/046081.ht> ml" , does the "mri_coreg" is the better instruction to use in my case? And, I found that I can't find the download link of freesurfer v6.0 in your website, and the link " ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_coreg.mac <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_coreg.mac> " is invalid to use. I really appreciate any help here HsinTsung Lee _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline <http://www.partners.org/complianceline> . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
I download mri_coreg from this website to put it on my virtual machine ubuntu \local\user\freesurfer\bin directory. But I run it and it say
https://gate.nmr.mgh.harvard.edu/safelinks/greve/mri_coreg
\local\user\freesurfer\bin\mri_coreg can not execute binary file?
Do you know why?
Thanks
Frank Yu
On Mon, Oct 3, 2016 at 12:24 PM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
you can get it from here
https://gate.nmr.mgh.harvard.edu/safelinks/greve/mri_coreg
On 10/03/2016 12:46 PM, Hsin-Tsung Lee wrote:
Dear Dr. Bruce I have one more question, does the "mri_coreg" available in version 5.30 stable, or it only available in v6.0(or it's beta version)?
Best Regard
HsinTsung Lee
2016-10-03 21:30 GMT+08:00 Bruce Fischl <fischl@nmr.mgh.harvard.edu mailto:fischl@nmr.mgh.harvard.edu>:
Hi HsinTsung FreeSurfer V6 isn't out yet, but we are moving towards having a beta. I'll leave the registration questions for Doug cheers Bruce On Mon, 3 Oct 2016, Hsin-Tsung Lee wrote: Dear freesurfer community I have used the freesurfer v5.30 stable on linux, I want to fusion the CT image and the MRI T1 image. The CT image was signed form the epilepsy patient after the inserted depth electrode surgery. The MR image was sign before the operation. I tried to register them by the "bbregister" or "mri_robust_register" , but it didn't work good. And I had seen the website page"https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2016-June/046081.ht
<https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2016-June/046081.ht>
ml" , does the "mri_coreg" is the better instruction to use in my case? And, I found that I can't find the download link of freesurfer v6.0 in your website, and the link " ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_coreg.mac
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_coreg.mac>
" is invalid to use. I really appreciate any help here HsinTsung Lee _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline <http://www.partners.org/complianceline> . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
I use sudo chmod u+x mri_coreg, so it should can be run.
Frank Yu
On Thu, Dec 15, 2016 at 10:51 AM, Frank Robert frabob2015@gmail.com wrote:
I download mri_coreg from this website to put it on my virtual machine ubuntu \local\user\freesurfer\bin directory. But I run it and it say
https://gate.nmr.mgh.harvard.edu/safelinks/greve/mri_coreg
\local\user\freesurfer\bin\mri_coreg can not execute binary file?
Do you know why?
Thanks
Frank Yu
On Mon, Oct 3, 2016 at 12:24 PM, Douglas N Greve < greve@nmr.mgh.harvard.edu> wrote:
you can get it from here
https://gate.nmr.mgh.harvard.edu/safelinks/greve/mri_coreg
On 10/03/2016 12:46 PM, Hsin-Tsung Lee wrote:
Dear Dr. Bruce I have one more question, does the "mri_coreg" available in version 5.30 stable, or it only available in v6.0(or it's beta version)?
Best Regard
HsinTsung Lee
2016-10-03 21:30 GMT+08:00 Bruce Fischl <fischl@nmr.mgh.harvard.edu mailto:fischl@nmr.mgh.harvard.edu>:
Hi HsinTsung FreeSurfer V6 isn't out yet, but we are moving towards having a beta. I'll leave the registration questions for Doug cheers Bruce On Mon, 3 Oct 2016, Hsin-Tsung Lee wrote: Dear freesurfer community I have used the freesurfer v5.30 stable on linux, I want to fusion the CT image and the MRI T1 image. The CT image was signed form the epilepsy patient after the inserted depth electrode surgery. The MR image was sign before the operation. I tried to register them by the "bbregister" or "mri_robust_register" , but it didn't work good. And I had seen the website page"https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2016-June/046081.ht
<https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2016-June/046081.ht>
ml" , does the "mri_coreg" is the better instruction to use in my case? And, I found that I can't find the download link of freesurfer v6.0 in your website, and the link " ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_coreg.mac
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_coreg.mac>
" is invalid to use. I really appreciate any help here HsinTsung Lee _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline <http://www.partners.org/complianceline> . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
you can get a copy of mri_coreg here
https://gate.nmr.mgh.harvard.edu/safelinks/greve/mri_coreg
On 10/03/2016 09:30 AM, Bruce Fischl wrote:
Hi HsinTsung
FreeSurfer V6 isn't out yet, but we are moving towards having a beta. I'll leave the registration questions for Doug cheers Bruce
On Mon, 3 Oct 2016, Hsin-Tsung Lee wrote:
Dear freesurfer community I have used the freesurfer v5.30 stable on linux, I want to fusion the CT image and the MRI T1 image. The CT image was signed form the epilepsy patient after the inserted depth electrode surgery. The MR image was sign before the operation. I tried to register them by the "bbregister" or "mri_robust_register" , but it didn't work good. And I had seen the website page"https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2016-June/046081.ht ml" , does the "mri_coreg" is the better instruction to use in my case?
And, I found that I can't find the download link of freesurfer v6.0 in your website, and the link " ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_coreg.mac
" is invalid to use.
I really appreciate any help here
HsinTsung Lee
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
Douglas N Greve -
Frank Robert -
Hsin-Tsung Lee