Dear All, I have been trying to recon all a patient and unfortunately nothing is happening after 24 hrs of processing so far .No error messages are coming up either .This is the line it got stuck,CORRECTING DEFECT 10 vertices 67735 convex hull 9509 This is a rerun after my initial processing failed for the same data set ,and patiently waited 36 hrs at Correcting Defect 10 before logging off .Do you know why this is happening.Does it have some thing to do with the data itself. In Thanks Chikku
Hi Chikku, look at the wm.mgz to see if the cerebellum is still attached doug
On 02/14/2013 11:22 AM, Varghese Chikku wrote:
Dear All, I have been trying to recon all a patient and unfortunately nothing is happening after 24 hrs of processing so far .No error messages are coming up either .This is the line it got stuck,CORRECTING DEFECT 10 vertices 67735 convex hull 9509 This is a rerun after my initial processing failed for the same data set ,and patiently waited 36 hrs at Correcting Defect 10 before logging off .Do you know why this is happening.Does it have some thing to do with the data itself. In Thanks Chikku
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
or if the skull is attached or the two hemis. The time it takes to correct a defect is quadratic in the size of the (convex hull of) the defect, so small ones are fast, and big ones take forever. Anything over 15K vertices or so usually means there is something dramatically wrong with your data. You can look at the ?h.orig.nofix or ?h.inflated.nofix surfaces to get an idea
cheers Bruce On Thu, 14 Feb 2013, Douglas N Greve wrote:
Hi Chikku, look at the wm.mgz to see if the cerebellum is still attached doug
On 02/14/2013 11:22 AM, Varghese Chikku wrote:
Dear All, I have been trying to recon all a patient and unfortunately nothing is happening after 24 hrs of processing so far .No error messages are coming up either .This is the line it got stuck,CORRECTING DEFECT 10 vertices 67735 convex hull 9509 This is a rerun after my initial processing failed for the same data set ,and patiently waited 36 hrs at Correcting Defect 10 before logging off .Do you know why this is happening.Does it have some thing to do with the data itself. In Thanks Chikku
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Douglas N Greve -
Varghese Chikku