You can put it somewhere in your path

On 10/26/2017 10:35 AM, Hsu, Eugene wrote:

Dear Dr. Greve,

I checked $FREESURFER_HOME/bin in Stable 6 and 3dvolreg.afni is indeed missing but I found it in 5.3.

However, I don't have permission to copy the file from 5.3 over to Stable 6:

cannot create regular file `/autofs/cluster/freesurfer/centos6_x86_64/stable6/bin/3dvolreg.afni': Permission denied

Is there a way to get this done? Thanks so much for the help!

--Eugene

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*From:* freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas Greve greve@nmr.mgh.harvard.edu *Sent:* Wednesday, October 25, 2017 5:39:27 PM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] Preproc-sess Error

it is not in $FREESURFER_HOME/bin ? If not, you can copy it from 5.3

On 10/25/17 4:59 PM, Hsu, Eugene wrote:

...

Hi FreeSurfer Experts,

We're trying to run preproc-sess on FreeSurfer 6, but we're encountering an error when motion correcting:

ERROR: cannot find AFNI command 3dvolreg.afni

When we tried Freesurfer 5.3 the preproc-sess ran to completion.

Thanks for your help!

--Eugene

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