Hi Veronica

it's because you are mixing versions. Can you rerun your subject with 6.0 from scratch?

cheers Bruce On Tue, 21 Mar 2017, Veronica Munoz wrote:

Dear all,

I'm trying to add FLAIR data to a subject. I did the first ("classic") recon-all on a platform so I get the following warnings:

INFO: FreeSurfer build stamps do not match Subject Stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0 Current Stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c

INFO: current FREESURFER_HOME does not match that of previous processing.     Current: /home/munoz/Documents/freesurfer     Previous:/tmp/wrk/DIRAC_piXnbapilot/50587390/recon-all.sh-445574845579047/freesurfer

Then recon all exits with the following error:

#@# Jacobian white lh Tue Mar 21 12:25:24 CET 2017 /media/sf_C_DRIVE/Users/munoz/Documents/Stage_FLI/results/FLAIRtest/AC_005/ scripts

mris_jacobian ../surf/lh.white.preaparc ../surf/lh.sphere.reg ../surf/lh.jacobian_white

reading surface from ../surf/lh.white.preaparc... MRISread(../surf/lh.white.preaparc): could not open file No such file or directory mris_jacobian: could not read surface file ../surf/lh.white.preaparc No such file or directory Linux iu-dv-464-vm.creatis.insa-lyon.fr 4.9.7-201.fc25.x86_64 #1 SMP Thu Feb 2 23:32:42 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux

Does this have something to do with my current Freesurfer version ? I don't really know what information does "preaparc" contain.

Thank you for your help.

Best regards,

Veronica veronica.munoz@creatis.insa-lyon.fr