You can load them in freeview through tksurferfv, something like tksurferfv fsaverage lh inflated -aparc -ov fmcpr.odd.sm5.fsaverage.lh.nii.gz There's not much to see:)

On 10/16/2018 03:00 PM, Jacob Matthews wrote:

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Hi FS Team,

We are running our first fsfast pipeline, and starting with a single subject to test everything. We successfully ran preproc-sess with the following command:

preproc-sess -s 11987_20180731 -surface fsaverage lhrh -mni305 -fwhm 5 -per-run -sliceorder odd -fsd bold

We wanted to check the outputs. It was clear how to view most intermediate outputs, but we didn't know how to view the surface space outputs: fmcpr.odd.sm5.fsaverage.rh.nii.gz fmcpr.odd.sm5.fsaverage.lh.nii.gz

Loading them into freeview as surfaces fails. We thought perhaps they needed to be loaded on top of an fsaverage surface, but didn't know where to start this process.

Thanks,

Jacob Matthews MRI Specialist Rotman Research Institute Baycrest Hospital 416-785-2500 ext. 3322

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