Hello,

I ran a longitudinal analysis cortical structure in Freesurfer version 5.3. I'd now like to compute hippocampus subfields using the new beta version of the "Segmentation of hippocampal subfields and nuclei of the amygdala" tool (https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldsAndNucleiOfAmy...).

I'm running into several errors when running segmentHA_T1_long.sh. Upon closer inspection of the script, it's not clear to me whether this tool is compatible with scans processed in the 5.3 version of the longitudinal pipeline.

Can you please confirm?

Thanks, Lara