Hi Jurij

no sorry, that sounds like a research project!

cheers Bruce On Fri, 27 Nov 2015, Jurij Wiede wrote:

Hi,   I'm sitting on a bunch of data that requires quality control (QC). While there are several guidelines for skullstrip or gray/white matter segmentation QC, I couldn't find anything on subcortical QC. As far as I know freesurfer classifies the different structures probabilistically using a preexisting atlas. This makes it rather impossible to QC the segmentation purely based on intensity differences.  So I was asking myself if there might be any additional possibility than to merely rate the quality of the subcortical segmentation by more or less subjectively comparing their forms with a hypothetical ideal form?   Thanks,   Jurij