Hi there
is there a way to convert .mesh (BrainVisa) to the Freesurfer surface format? mri_convert doesn't seem to do it.
best wishes
Trisanna
-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology
Hi there
is there a way to convert .mesh (BrainVisa) to the Freesurfer surface format? mri_convert doesn't seem to do it.
best wishes
Trisanna
-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology
Hi Trisanna,
perhaps check with the BrainVisa people? We don't know the specs of that format. Maybe you could read it into matlab, then write it out in our format with write_surf.m?
cheers Bruce
On Wed, 15 Jun 2016, Trisanna Sprung-Much wrote:
Hi there
is there a way to convert .mesh (BrainVisa) to the Freesurfer surface format? mri_convert doesn't seem to do it.
best wishes
Trisanna
-- Ph.D. CandidateMcGill University Integrated Program in Neuroscience Psychology
Hello Trisanna, as pointed out by Matt as I started to write this email, the solution is in the Gifti format. If you install brainvisa, it provides tools to convert from .mesh to .gii. You can then read these in FreeSurfer or convert them using mri_convert. You can write to me privately if you want to have more details about how to perform the conversion using Brainvisa. Best,
Olivier
Bruce Fischl mailto:fischl@nmr.mgh.harvard.edu 15 juin 2016 16:39 Hi Trisanna,
perhaps check with the BrainVisa people? We don't know the specs of that format. Maybe you could read it into matlab, then write it out in our format with write_surf.m?
cheers Bruce
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Trisanna Sprung-Much mailto:trisanna.sprung-much@mail.mcgill.ca 15 juin 2016 16:33
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. Trisanna Sprung-Much mailto:trisanna.sprung-much@mail.mcgill.ca 14 juin 2016 22:12 Hi there
is there a way to convert .mesh (BrainVisa) to the Freesurfer surface format? mri_convert doesn't seem to do it.
best wishes
Trisanna
-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
thanks all, really appreciate it!
Best
Trisanna
-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology
On Wed, Jun 15, 2016 at 10:46 AM, Olivier Coulon <olivier.coulon@univ-amu.fr
wrote:
Hello Trisanna, as pointed out by Matt as I started to write this email, the solution is in the Gifti format. If you install brainvisa, it provides tools to convert from .mesh to .gii. You can then read these in FreeSurfer or convert them using mri_convert. You can write to me privately if you want to have more details about how to perform the conversion using Brainvisa. Best,
Olivier
Bruce Fischl fischl@nmr.mgh.harvard.edu 15 juin 2016 16:39 Hi Trisanna,
perhaps check with the BrainVisa people? We don't know the specs of that format. Maybe you could read it into matlab, then write it out in our format with write_surf.m?
cheers Bruce
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Trisanna Sprung-Much trisanna.sprung-much@mail.mcgill.ca 15 juin 2016 16:33
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. Trisanna Sprung-Much trisanna.sprung-much@mail.mcgill.ca 14 juin 2016 22:12 Hi there
is there a way to convert .mesh (BrainVisa) to the Freesurfer surface format? mri_convert doesn't seem to do it.
best wishes
Trisanna
-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
--
Olivier Coulon, Aix-Marseille University, LSIS Laboratory CNRS Director of Research,
olivier.coulon@univ-amu.fr http://olivier.meca-brain.org MeCA Research Group http://www.meca-brain.org Institut des Neurosciences de La Timone Faculté de Médecine, 27 Bd Jean Moulin, 13005 - Marseille, France Tél: +33 (0)4 91 32 40 59
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Look at mris_convert. If that doesn¹t help would also see if BrainVisa allows conversion to a third format that mris_convert works with. Finally, does BrainVisa not support GIFTI (the standard, cross-neuroimaging software surface format)?
Peace,
Matt.
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Trisanna Sprung-Much trisanna.sprung-much@mail.mcgill.ca Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Wednesday, June 15, 2016 at 9:33 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Fwd: concerting surface format
Hi there
is there a way to convert .mesh (BrainVisa) to the Freesurfer surface format? mri_convert doesn't seem to do it.
best wishes
Trisanna
-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Matt Glasser -
Olivier Coulon -
Trisanna Sprung-Much