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Please also let us know the version of the OS you are comparing running both the 6.0.0 and 7.1.0 release on. - R.
On May 22, 2020, at 14:49, Ruopeng Wang <rpwang@nmr.mgh.harvard.edu> wrote:Hi Antonin,Thanks for the report. We’ll look into this.Best,RuopengOn May 22, 2020, at 2:42 PM, Antonín Škoch <ansk@ikem.cz> wrote: External Email - Use Caution Dear experts,I want to use freeview for viewing Gordon surface labels on inflated surface with custom coloring. I am using commandline likefreeview -viewport 3d -f $SUBJECTS_DIR/fsaverage/lh.inflated:label=L_Auditory_10.label:label_color=255,191,0:label=L_Auditory_11.label:label_color=255,140,0....etc (the commandline contains 161 labels)I observe that freeview in version 7.1.0 consumes much more RAM than in version 6.0, using identical command line. The difference is enormous: While in version 6.0 freeview consumes 1.5 GB RAM to successfully display all labels, freeview in version 7.1.0 consumes all memory available on the server (32 GB RAM) while only about 30 labels are actually loaded (then server start to swap and I am forced to kill freeview process).Are you aware of such behaviour?Regards,Antonin Skoch_______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer________________... mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Hi,
I am testing version
freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
against version freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b
My system is: Debian GNU/Linux 8.9 (jessie)
I tried to merge labels corresponding the same network into one, i.e. I have now only 11 labels, comprising almost all cortical surface. This seems to spare a bit RAM, but still it required approx. 38 GB RAM to load all labels.
Antonin
Od: fsbuild fsbuild@contbay.com Komu: freesurfer@nmr.mgh.harvard.edu Kopie: ansk@ikem.cz Odesláno: 23.5.2020 3:03 Předmět: Re: [Freesurfer] freeview is RAM greedy in version 7.1.0
Please also let us know the version of the OS you are comparing running both the 6.0.0 and 7.1.0 release on.
- R.
On May 22, 2020, at 14:49, Ruopeng Wang rpwang@nmr.mgh.harvard.edu wrote:
Hi Antonin,
Thanks for the report. We’ll look into this.
Best, Ruopeng
On May 22, 2020, at 2:42 PM, Antonín Škoch ansk@ikem.cz wrote:
External Email - Use Caution
Dear experts,
I want to use freeview for viewing Gordon surface labels on inflated surface with custom coloring. I am using commandline like
freeview -viewport 3d -f $SUBJECTS_DIR/fsaverage/lh.inflated:label=L_Auditory_10.label:label_color=255,191,0:label=L_Auditory_11.label:label_color=255,140,0....etc (the commandline contains 161 labels)
I observe that freeview in version 7.1.0 consumes much more RAM than in version 6.0, using identical command line.
The difference is enormous: While in version 6.0 freeview consumes 1.5 GB RAM to successfully display all labels, freeview in version 7.1.0 consumes all memory available on the server (32 GB RAM) while only about 30 labels are actually loaded (then server start to swap and I am forced to kill freeview process).
Are you aware of such behaviour?
Regards,
Antonin Skoch
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Antonin,
I’ve fixed the bug. You can download the latest freeview build here: https://surfer.nmr.mgh.harvard.edu/fswiki/UpdateFreeview https://surfer.nmr.mgh.harvard.edu/fswiki/UpdateFreeview
Best, Ruopeng
On May 23, 2020, at 2:08 AM, Antonín Škoch ansk@ikem.cz wrote:
External Email - Use CautionHi,
I am testing version
freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c against version freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b My system is: Debian GNU/Linux 8.9 (jessie)
I tried to merge labels corresponding the same network into one, i.e. I have now only 11 labels, comprising almost all cortical surface. This seems to spare a bit RAM, but still it required approx. 38 GB RAM to load all labels.
Antonin
Od: fsbuild fsbuild@contbay.com Komu: freesurfer@nmr.mgh.harvard.edu Kopie: ansk@ikem.cz Odesláno: 23.5.2020 3:03 Předmět: Re: [Freesurfer] freeview is RAM greedy in version 7.1.0
Please also let us know the version of the OS you are comparing running both the 6.0.0 and 7.1.0 release on.
- R.
On May 22, 2020, at 14:49, Ruopeng Wang rpwang@nmr.mgh.harvard.edu wrote:
Hi Antonin,
Thanks for the report. We’ll look into this.
Best, Ruopeng
On May 22, 2020, at 2:42 PM, Antonín Škoch <ansk@ikem.cz mailto:ansk@ikem.cz> wrote:
External Email - Use CautionDear experts,
I want to use freeview for viewing Gordon surface labels on inflated surface with custom coloring. I am using commandline like
freeview -viewport 3d -f $SUBJECTS_DIR/fsaverage/lh.inflated:label=L_Auditory_10.label:label_color=255,191,0:label=L_Auditory_11.label:label_color=255,140,0....etc (the commandline contains 161 labels)
I observe that freeview in version 7.1.0 consumes much more RAM than in version 6.0, using identical command line. The difference is enormous: While in version 6.0 freeview consumes 1.5 GB RAM to successfully display all labels, freeview in version 7.1.0 consumes all memory available on the server (32 GB RAM) while only about 30 labels are actually loaded (then server start to swap and I am forced to kill freeview process).
Are you aware of such behaviour?
Regards,
Antonin Skoch
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Antonín Škoch -
fsbuild -
Ruopeng Wang