Dear all, I’ve found out what the problem was; it was to do with the switching from Matlab R2012b runtime to R2014b. I’ll fix this as soon as possible and let you know. Apologies for all the inconvenience this might have caused. Cheers, /Eugenio

-- Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/

From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Emily K Clarke ekc23@duke.edu Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Friday, 12 January 2018 at 14:00 To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Amygdala segmentation runtime error

Hi Juan,

Yes, it was right at the end of December — the version file in the install is freesurfer-x86_64-unknown-linux-gnu-dev-20171228, and it looks like it was updated again January 2.

Best, Emily

From: "<Iglesias Gonzalez>", Eugenio <e.iglesias@ucl.ac.ukmailto:e.iglesias@ucl.ac.uk> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Date: Friday, January 12, 2018 at 3:46 AM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Amygdala segmentation runtime error

Hi Emily, When did you download the dev version? Was it very recently? Cheers, /E

-- Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/

From: <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Emily K Clarke <ekc23@duke.edumailto:ekc23@duke.edu> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Date: Thursday, 11 January 2018 at 20:57 To: "freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] Amygdala segmentation runtime error

Hi Freesurfer developers,

I’m attempting to run the new amygdala segmentation command (segmentHA_T1.sh) using the developer version of Freesurfer 6.0. However, when I run my script I receive the following error —

error while loading shared libraries: libmwlaunchermain.so: cannot open shared object file: No such file or directory

I checked with our cluster administrator, and we do have the Matlab R2012 runtime installed. Does anyone have any insight into what could be causing this error? I’ve attached my full output as well as my script in case that’s any help!

Thanks, Emily K. Clarke Duke University