Dear all,
I am running a surface-based group analysis. When I try to run mri_glmfit-sim, I always get the following error:
ERROR: you must supply --fwhm with --sim, even if it is 0
I get this error (which does not make any sense, since there is not fwhm info in the simulation) using both qdec-generated script and using command-line tools. The script that qdec generates is the following :
/usr/local/freesurfer/bin/mri_glmfit-sim --glmdir /home/eider/subjects/qdec/Untitled --sim perm 5000 2 perm.abs.2 --sim-sign abs --overwrite
Does anyone know what could be happening??
Thanks
- Roser -
What version are you using? I think this was a problem with 4.3.
doug
Roser Sala wrote:
Dear all,
I am running a surface-based group analysis. When I try to run mri_glmfit-sim, I always get the following error:
ERROR: you must supply --fwhm with --sim, even if it is 0
I get this error (which does not make any sense, since there is not fwhm info in the simulation) using both qdec-generated script and using command-line tools. The script that qdec generates is the following :
/usr/local/freesurfer/bin/mri_glmfit-sim --glmdir /home/eider/subjects/qdec/Untitled --sim perm 5000 2 perm.abs.2 --sim-sign abs --overwrite
Does anyone know what could be happening??
Thanks
- Roser -
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
True, I am using version 4.3.1.
Can I update only mri_glmfit-sim script??
Thanks
2009/11/9 Douglas N Greve greve@nmr.mgh.harvard.edu
What version are you using? I think this was a problem with 4.3.
doug
Roser Sala wrote:
Dear all,
I am running a surface-based group analysis. When I try to run mri_glmfit-sim, I always get the following error:
ERROR: you must supply --fwhm with --sim, even if it is 0
I get this error (which does not make any sense, since there is not fwhm info in the simulation) using both qdec-generated script and using command-line tools. The script that qdec generates is the following :
/usr/local/freesurfer/bin/mri_glmfit-sim --glmdir /home/eider/subjects/qdec/Untitled --sim perm 5000 2 perm.abs.2 --sim-sign abs --overwrite
Does anyone know what could be happening??
Thanks
- Roser -
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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