Hi Greg, the target (--targ) should be a volume, not the name of a subject (eg, 816/mri/orig.mgz) doug On 02/21/2013 02:23 PM, Gregory Kirk wrote:

Greetings lords of freesurfer!

I am having a problem getting a combined cvs warp+bbregister to map an FA volume onto a template.

mri_vol2vol --targ 816 --m3z combined_to816_elreg_afteraseg-norm.m3z --noDefM3zPath --reg /study5/aa-scratch/TEENEMO/twins_tracula/recons/821/dmri/xfms/anatorig2diff.bbr.dat --mov /study5/aa-scratch/TEENEMO/twins_tracula/recons/821/dmri/dtifit_FA.nii.gz --o test --no-save-reg

spits out Using the m3z file as it is; no assumed location. movvol /study5/aa-scratch/TEENEMO/twins_tracula/recons/821/dmri/dtifit_FA.nii.gz targvol 816 outvol test regfile /study5/aa-scratch/TEENEMO/twins_tracula/recons/821/dmri/xfms/anatorig2diff.bbr.dat invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Morphing InvertMorph 0 Synth 0 SynthSeed 1362252270 corRead(): can't open file /study5/aa-scratch/TEENEMO/twins_freesurfer/816/COR-.info

i know i have not seen a file COR-.info in the top level subject directory in the modern age of the universe.

i know i saw this before but my notes from the last time i figured this out got lost in a file system cleanup.

can one of you tell me where i went astray ?

thank you

Greg _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer