option 2. should work fine (a subjects dir with symlinks).

On Tue, 2010-11-09 at 15:26 -0500, Mishkin Derakhshan wrote:

Hi,

My data is not in the usual SUBJECTS_DIR/fsid structure.

1. Is it possible to run qdec so that it loads each subject from a

full path instead of expecting them all to be under the same SUBJECTS_DIR? ie. with something like this:

qdec.table.dat path_to_fsid gender age /full/path/fsid1 Male 23 /full/otherpath/fsid2 Female 27

2. If not, do you think creating a new common subjects dir and then

using symbolic links will work?

3. If not, would I have to copy the entirety of the <fsid> directory,

or do I only need a select few subdirs like the surf/ and stats/ ?

thanks, mishkin _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer