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Hi,
Is it possible to collect all 18 tracts stats into a single file? Has tried: "tractstats2table --load-pathstats-from-file paths.txt --overall --tablefile tractAll.txt" Path.txt contains all the subjects' 18 paths' full path directory Error message: "all stats files need to have the same pathwayname. try verbose option These are the pathwaynames found: ['fmajor', 'fminor', 'lh.atr', 'lh.cab', 'lh.ccg', 'lh.cst', 'lh.ilf', 'lh.slfp', 'lh.slft', 'lh.unc', 'rh.atr', 'rh.cab', 'rh.ccg', 'rh.cst', 'rh.ilf', 'rh.slfp', 'rh.slft', 'rh.unc']"
Best, Qi
If you're not happy with the output of tractstats2table and want something custom, you can just do a search in the stats files. They're simple text files. You can see how these files are named and what their contents look like here: https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TraculaStatistics#Aniso...
You'd have to search for the lines that contain subjectname, pathwayname, and the name of the diffusion measure that you want. ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Zeng, Qi qi.zeng@icahn.mssm.edu Sent: Friday, May 8, 2020 9:58 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] tracula stats summary
External Email - Use Caution
Hi,
Is it possible to collect all 18 tracts stats into a single file? Has tried: "tractstats2table --load-pathstats-from-file paths.txt --overall --tablefile tractAll.txt" Path.txt contains all the subjects' 18 paths' full path directory Error message: "all stats files need to have the same pathwayname. try verbose option These are the pathwaynames found: ['fmajor', 'fminor', 'lh.atr', 'lh.cab', 'lh.ccg', 'lh.cst', 'lh.ilf', 'lh.slfp', 'lh.slft', 'lh.unc', 'rh.atr', 'rh.cab', 'rh.ccg', 'rh.cst', 'rh.ilf', 'rh.slfp', 'rh.slft', 'rh.unc']"
Best, Qi
--
Ph.D. candidate Icahn School of Medicine at Mount Sinai
External Email - Use Caution
Already Solved. Thank you so much!
Best, Qi
On Fri, May 8, 2020 at 10:46 AM Yendiki, Anastasia AYENDIKI@mgh.harvard.edu wrote:
If you're not happy with the output of tractstats2table and want something custom, you can just do a search in the stats files. They're simple text files. You can see how these files are named and what their contents look like here:
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TraculaStatistics#Aniso...
You'd have to search for the lines that contain subjectname, pathwayname, and the name of the diffusion measure that you want.
*From:* freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Zeng, Qi < qi.zeng@icahn.mssm.edu> *Sent:* Friday, May 8, 2020 9:58 AM *To:* Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] tracula stats summary
External Email - Use CautionHi,
Is it possible to collect all 18 tracts stats into a single file? Has tried: "tractstats2table --load-pathstats-from-file paths.txt --overall --tablefile tractAll.txt" Path.txt contains all the subjects' 18 paths' full path directory Error message: "all stats files need to have the same pathwayname. try verbose option These are the pathwaynames found: ['fmajor', 'fminor', 'lh.atr', 'lh.cab', 'lh.ccg', 'lh.cst', 'lh.ilf', 'lh.slfp', 'lh.slft', 'lh.unc', 'rh.atr', 'rh.cab', 'rh.ccg', 'rh.cst', 'rh.ilf', 'rh.slfp', 'rh.slft', 'rh.unc']"
Best, Qi
--
Ph.D. candidate Icahn School of Medicine at Mount Sinai
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Yendiki, Anastasia -
Zeng, Qi