sorry - on further inspection i changed "Common-Space Subject" to the new averaged subject folder. However, when trying to run analyses, i get an error message:
Error in Analyze: Couldn't open file /usr/local/FS5/subjects/FS080920cr/surf/lh.thickness.fwhm10.avgsubject.mgh (where"avgsubject" was the output name of the averaged subject template). Indeed, there are ?h.?.fwhm?.fsaverage.mgh in my subject folders (presumable from the previous preproc), but no new ones.
thanks ilana
freesurfer@nmr.mgh.harvard.edu