Hi all,
I just want to convert .mgz files to .nifti using mri_convert, do I have to flip my image when I do that using RAS ? or I should simply use:
Mri_convert input_file_name.mgz output_file_name.nii
Thanks in advance, Siddharth
mri_convert file.mgz file.nii.gz
should do the trick On Tue, 4 Jun 2013, Ray, Siddharth wrote:
Hi all,
I just want to convert .mgz files to .nifti using mri_convert, do I have to flip my image when I do that using RAS ? or I should simply use:
Mri_convert input_file_name.mgz output_file_name.nii
Thanks in advance,
Siddharth
Thanks!!
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Tuesday, June 04, 2013 9:51 AM To: Ray, Siddharth Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mri_convert mgz to nifti
mri_convert file.mgz file.nii.gz
should do the trick On Tue, 4 Jun 2013, Ray, Siddharth wrote:
Hi all,
I just want to convert .mgz files to .nifti using mri_convert, do I have to flip my image when I do that using RAS ? or I should simply use:
Mri_convert input_file_name.mgz output_file_name.nii
Thanks in advance,
Siddharth
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The command is 'mri_convert' not 'Mri_convert' -- at least on case sensitive filesystems (like Linux and some-but-not-all Mac OS X).
On 6/4/13 10:46 , Ray, Siddharth wrote:
Hi all,
I just want to convert .mgz files to .nifti using mri_convert, do I have to flip my image when I do that using RAS ? or I should simply use:
Mri_convert input_file_name.mgz output_file_name.nii
Thanks in advance,
Siddharth
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