You will need to create an annotation of the lobes (use mri_annotation2label --lobesStrict, or define your own). Then run mri_aparc2aseg with the --labelwm option. You can look in a recon-all.log for the other command options

doug

On 01/17/2013 07:54 AM, Gabriel Gonzalez Escamilla wrote:

Dear freesurfers

I'm trying to get the WM parcellation by lobes, I have read some previous FS archives regarding a similar topic, but they only want the volume value, and I'm interested in a WM lobes parcellation in mgz format (like aseg.mgz ), and I'm also interested in knowing if is possible to obtain this lobar parcellation for only cortical WM.

Many thanks in advanced, Gabriel

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