Dear FS experts,
I'm trying to transform some files from fsaverage space to fsaverage5 space using mri_surf2surf(fs version: 6.0), however, it is weird that the results turn out to be all zeros on the fsaverage5 surface, the command line I used if : mri_surf2surf -srcsubject fsaverage -sval ${hemi}.fsaverage.nii.gz -hemi ${hemi} --cortex -trgsubject fsaverage5 -tval ${hemi}.fsaverage5.nii.gz -surfreg sphere.reg. There is no error reported.
The strange thing is that it works well using FS5.3, it failed after I update to FS 6.0. Any suggestion of solving this?
Many thanks!
Best!
Dong
Dear FS experts,
I’m trying to transform some files from fsaverage space to fsaverage5 space using mri_surf2surf(FS version: 6.0), however, it is weird that the results turn out to be all zeros on the fsaverage5 surface, the command line I used is : mri_surf2surf –srcsubject fsaverage –sval ${hemi}.fsaverage.nii.gz –hemi ${hemi} --cortex –trgsubject fsaverage5 –tval ${hemi}.fsaverage5.nii.gz –surfreg sphere.reg. There is no error reported.
The strange thing is that it works well using FS5.3, it failed after I update to FS 6.0. Any suggestion of solving this?
Many thanks! Best! Dong
I just tried it, and there was not a problem. Are you sure that hem.fsaverage.nii.gz has non-zeros in it? Can you send it to me? What platform are you using?
On 04/26/2017 11:55 AM, dongnandi1 wrote:
Dear FS experts,
I’m trying to transform some files from fsaverage space to fsaverage5 space using mri_surf2surf(FS version: 6.0), however, it is weird that the results turn out to be all zeros on the fsaverage5 surface, the command line I used is : mri_surf2surf –srcsubject fsaverage –sval ${hemi}.fsaverage.nii.gz –hemi ${hemi} --cortex –trgsubject fsaverage5 –tval ${hemi}.fsaverage5.nii.gz –surfreg sphere.reg. There is no error reported.
The strange thing is that it works well using FS5.3, it failed after I update to FS 6.0. Any suggestion of solving this?
Many thanks! Best! Dong
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