I'm sorry but I have another question for you.
Sometimes the cutting planes are not correct and it doesn't delete the cerebellum.
Whay can I do? Manual editing is my only chance?
Thanks a lot
Massimiliano Calabrese Neuroimaging Group Neuroimmunology Branch NINDS, NIH
Cutting plane not correct is usually due to the wrong talairach.xfm or the noisy image. Are you sure that you are getting the correct talairach.xfm?
This problem has been on the mailing list many times in the past.
Tosa
Calabrese Massimiliano wrote:
I'm sorry but I have another question for you.
Sometimes the cutting planes are not correct and it doesn't delete the cerebellum.
Whay can I do? Manual editing is my only chance?
Thanks a lot
Massimiliano Calabrese Neuroimaging Group Neuroimmunology Branch NINDS, NIH
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
either set the pons cutting plane manually using the -pons <x> <y> <z> in mri_fill. This may fix things, but in some cases it may not due to spurious connections between the cerebellum and occipital cortex (particularly in noisy scans). These have to be corrected manually.
Bruce
On Mon, 8 Nov 2004, Calabrese Massimiliano wrote:
I'm sorry but I have another question for you.
Sometimes the cutting planes are not correct and it doesn't delete the cerebellum.
Whay can I do? Manual editing is my only chance?
Thanks a lot
Massimiliano Calabrese Neuroimaging Group Neuroimmunology Branch NINDS, NIH
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Calabrese Massimiliano -
Yasunari Tosa