Sorry accidentally found your old email now.

Anyway, the problem is the -- in the subject name. Either remove those or probably easier: name the base 10022_base

Best, Martin

On Mon, 2012-02-27 at 15:36 -0700, Brain Apprentice wrote:

Hi,

I was wondering if I am doing something wrong when doing step 3 of the longitudinally process.

The error I get is: ERROR: Template/base ID cannot be the same as a time point ID (in /shared/subjects/subjects/a-aut-v510/10022/base-tps)

Here is the environment: -------- freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /usr/local/freesurfer510 FSFAST_HOME /usr/local/freesurfer510/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /usr/local/freesurfer510/subjects MNI_DIR /usr/local/freesurfer510/mni FSL_DIR /usr/local/fsl418 ---------- FreeSurfer variables reset ---------- SUBJECTS_DIR /shared/subjects/subjects/a-aut-v510 FSLOUTPUTTYPE NIFTI_GZ

The command I am running is: recon-all -long 10022--01-24-06--0470 10022 -all

The base-tps file is: 10022--01-24-06--0470 10022--03-14-06--0441 10022--04-14-08--0463 10022--04-25-06--0442 10022--07-25-06--0462 10022--08-26-10--0555 10022--10-21-06--0461 10022--11-20-08--0412

The <tpNid> is: 10022--01-24-06--0470

The <templateid> is: 10022

I am trying to follow the format listed on http://surfer.nmr.mgh.harvard.edu/fswiki/LongitudinalProcessing however it still does not seem to work.

Does anyone have any idea on what I need to do differently?

Thank You in advance for any suggestions you might have.

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