Hi Adam you don't need to rerun mris_make_surfaces I don't think, but you will want to rerun mris_thickness to recompute the thickness after saving the new (repositioned) surfaces

cheers Bruce On Mon, 3 Jun 2013, Adam Martersteck wrote:

Hi Freesurfer experts,

I noticed that Freeview has gotten an upgrade from v5.1 to v5.3 and the reposition tool now has a GUI and it works!

Dr. Fischl said in response to Dr. Pietro De Rossi on October 24th, 2012 that the pipeline for the reposition surface tool was not yet implemented and you still needed to rerun “mris_make_surface (including mris_thickness to regenerate the thickness map)”.[https://mail.nmr.mgh.harvard.edu/pipermail///freesurfer/2012-October/02620 9.html I noticed that the freeview virtual representation of the surfaces are immediately regenerated.

Should I be running the mris_make_surface command after saving the new surface(s)?

Thanks,

Adam Martersteck

Cognitive Neurology and Alzheimer's Disease Center Northwestern University Feinberg School of Medicine 320 E. Superior Street, Searle 11 Chicago, IL 60611