If you want to use the --cache-in option, you need to have run recon-all with the -qcache option. If you take away the -cache-in option, then mris_preproc should run correctly

On 11/28/2018 12:45 PM, Larissa Bechtle wrote:

External Email - Use Caution

Hi everyone, thank you very much for answering! Originally I created the FSGD File with excel, saved it as a tab delimited text file and used the tr-command afterwards (tr ’\r’ ’\n’ < FSGD_2.fsgd.txt > FSGD_2.fsgd). After having read your message I recreated the FSGD-File with TextEdit instead. Now it is [kpsy-mac84024:~/Desktop/Larissa/Gewalt] Forschung% mris_preproc --fsgd FSGD.fsgd --cache-in thickness.fwhm10.fsaverage --target fsaverage --hemi lh --out lh.gewalt.10.mgh nsubjects = 46 ERROR: cannot find /Users/Forschung/Desktop/Larissa/Gewalt//xp09/surf/lh.thickness.fwhm10.fsaverage.mgh I send you the actual fsgd-File an an attachement and would be very thankful for some advice Best, Larissa

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer