Dear Maria,

I am also faced the similar problem when I used Philips DICOM. Then I converted to nifti format by using dcm2nii tool. It is working fine. You can also try.

Best Ramesh

On Mon, Jun 5, 2017 at 7:56 PM, Maria Economou meconomou1@sheffield.ac.uk wrote:

Dear FreeSurfer developers,

Sorry for cross-posting, perhaps my previous e-mail was missed.

I've been trying to run recon-all for my first subject and I keep getting several errors like:

ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1

Too many open files ERROR: reading /Applications/freesurfer/FreeSurferColorLUT.txt Loading pixel data ERROR: /Applications/CONTROLS/147364_Nd_19760623/IM-0001-0001.dcm is not a dicom file 70092 Requested element (18 82) not found in DCM_GetElementVM

I have used the DICOM files from my 3D T1 MPRAGE SENSE images, so I don't understand why I get these errors.

This is the command i used: uos$ recon-all -subjid 147364 -i /Applications/CONTROLS/147364_Nd_19760623/IM-0001-0001.dcm -all

FreeSurfer version: freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c platform: OS X El Capitan Version 10.11.6

Please find attached the recon-all.log

Many thanks, Maria.

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