What measure is for the cortical surface area? The measure in the aparc.stats file states 'WhiteSurfArea'
Jim
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mm2
On 10/12/2017 02:15 PM, Alexopoulos, Dimitrios wrote:
What measure is for the cortical surface area?
The measure in the aparc.stats file states ‘WhiteSurfArea’
Jim
The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
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Specifically, where in the aparc.stats file (or other file) is the cortical surface area? I only see default output for 'WhiteSurfArea'.
Jim
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve Sent: Thursday, October 12, 2017 4:16 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] cortical surface area
mm2
On 10/12/2017 02:15 PM, Alexopoulos, Dimitrios wrote:
What measure is for the cortical surface area?
The measure in the aparc.stats file states 'WhiteSurfArea'
Jim
--
The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
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________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
Hi Jim
check the ?h.aparc.pial.stats file. I think the total surface area should be in there.
cheers Bruce On Thu, 12 Oct 2017, Alexopoulos, Dimitrios wrote:
Specifically, where in the aparc.stats file (or other file) is the cortical surface area? I only see default output for 'WhiteSurfArea'.
Jim
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve Sent: Thursday, October 12, 2017 4:16 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] cortical surface area
mm2
On 10/12/2017 02:15 PM, Alexopoulos, Dimitrios wrote:
What measure is for the cortical surface area?
The measure in the aparc.stats file states 'WhiteSurfArea'
Jim
--
The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
I don't see this file in the stats directory using FS 5.3.
Jim
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl Sent: Thursday, October 12, 2017 4:52 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] cortical surface area
Hi Jim
check the ?h.aparc.pial.stats file. I think the total surface area should be in there.
cheers Bruce On Thu, 12 Oct 2017, Alexopoulos, Dimitrios wrote:
Specifically, where in the aparc.stats file (or other file) is the cortical surface area? I only see default output for 'WhiteSurfArea'.
Jim
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve Sent: Thursday, October 12, 2017 4:16 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] cortical surface area
mm2
On 10/12/2017 02:15 PM, Alexopoulos, Dimitrios wrote:
What measure is for the cortical surface area?
The measure in the aparc.stats file states 'WhiteSurfArea'
Jim
--
The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
oh, sorry, I missed the 5.3 part. YOu can always compute it for a subject via:
mris_anatomical_stats <subject> <hemi> pial
cheers Bruce On Thu, 12 Oct 2017, Alexopoulos, Dimitrios wrote:
I don't see this file in the stats directory using FS 5.3.
Jim
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl Sent: Thursday, October 12, 2017 4:52 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] cortical surface area
Hi Jim
check the ?h.aparc.pial.stats file. I think the total surface area should be in there.
cheers Bruce On Thu, 12 Oct 2017, Alexopoulos, Dimitrios wrote:
Specifically, where in the aparc.stats file (or other file) is the cortical surface area? I only see default output for 'WhiteSurfArea'.
Jim
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve Sent: Thursday, October 12, 2017 4:16 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] cortical surface area
mm2
On 10/12/2017 02:15 PM, Alexopoulos, Dimitrios wrote:
What measure is for the cortical surface area?
The measure in the aparc.stats file states 'WhiteSurfArea'
Jim
--
The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Thanks.
I ran this command: mris_anatomical_stats subjectID lh pial It gave me a total surface area of 115007 mm^2
I also tried the following command from within the 'label' directory: mris_anatomical_stats -l lh.cortex.label -f lh.cortex.stats -b subjectID lh pial It gave me a total surface area 109458 mm^2
Which is the correct method and value for total cortical surface area?
Jim
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl Sent: Thursday, October 12, 2017 5:17 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] cortical surface area
oh, sorry, I missed the 5.3 part. YOu can always compute it for a subject via:
mris_anatomical_stats <subject> <hemi> pial
cheers Bruce On Thu, 12 Oct 2017, Alexopoulos, Dimitrios wrote:
I don't see this file in the stats directory using FS 5.3.
Jim
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl Sent: Thursday, October 12, 2017 4:52 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] cortical surface area
Hi Jim
check the ?h.aparc.pial.stats file. I think the total surface area should be in there.
cheers Bruce On Thu, 12 Oct 2017, Alexopoulos, Dimitrios wrote:
Specifically, where in the aparc.stats file (or other file) is the cortical surface area? I only see default output for 'WhiteSurfArea'.
Jim
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve Sent: Thursday, October 12, 2017 4:16 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] cortical surface area
mm2
On 10/12/2017 02:15 PM, Alexopoulos, Dimitrios wrote:
What measure is for the cortical surface area?
The measure in the aparc.stats file states 'WhiteSurfArea'
Jim
--
The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
The 2nd is the one you want as the first one includes non cortical structures in the medial wall.
On 10/12/17 6:35 PM, Alexopoulos, Dimitrios wrote:
Thanks.
I ran this command: mris_anatomical_stats subjectID lh pial It gave me a total surface area of 115007 mm^2
I also tried the following command from within the 'label' directory: mris_anatomical_stats -l lh.cortex.label -f lh.cortex.stats -b subjectID lh pial It gave me a total surface area 109458 mm^2
Which is the correct method and value for total cortical surface area?
Jim
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl Sent: Thursday, October 12, 2017 5:17 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] cortical surface area
oh, sorry, I missed the 5.3 part. YOu can always compute it for a subject via:
mris_anatomical_stats <subject> <hemi> pial
cheers Bruce On Thu, 12 Oct 2017, Alexopoulos, Dimitrios wrote:
I don't see this file in the stats directory using FS 5.3.
Jim
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl Sent: Thursday, October 12, 2017 4:52 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] cortical surface area
Hi Jim
check the ?h.aparc.pial.stats file. I think the total surface area should be in there.
cheers Bruce On Thu, 12 Oct 2017, Alexopoulos, Dimitrios wrote:
Specifically, where in the aparc.stats file (or other file) is the cortical surface area? I only see default output for 'WhiteSurfArea'.
Jim
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve Sent: Thursday, October 12, 2017 4:16 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] cortical surface area
mm2
On 10/12/2017 02:15 PM, Alexopoulos, Dimitrios wrote:
What measure is for the cortical surface area?
The measure in the aparc.stats file states 'WhiteSurfArea'
Jim
--
The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Thank you for the input.
Jim
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Douglas Greve Sent: Friday, October 13, 2017 10:09 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] cortical surface area
The 2nd is the one you want as the first one includes non cortical structures in the medial wall.
On 10/12/17 6:35 PM, Alexopoulos, Dimitrios wrote:
Thanks.
I ran this command: mris_anatomical_stats subjectID lh pial It gave me a total surface area of 115007 mm^2
I also tried the following command from within the 'label' directory: mris_anatomical_stats -l lh.cortex.label -f lh.cortex.stats -b subjectID lh pial It gave me a total surface area 109458 mm^2
Which is the correct method and value for total cortical surface area?
Jim
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl Sent: Thursday, October 12, 2017 5:17 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] cortical surface area
oh, sorry, I missed the 5.3 part. YOu can always compute it for a subject via:
mris_anatomical_stats <subject> <hemi> pial
cheers Bruce On Thu, 12 Oct 2017, Alexopoulos, Dimitrios wrote:
I don't see this file in the stats directory using FS 5.3.
Jim
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl Sent: Thursday, October 12, 2017 4:52 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] cortical surface area
Hi Jim
check the ?h.aparc.pial.stats file. I think the total surface area should be in there.
cheers Bruce On Thu, 12 Oct 2017, Alexopoulos, Dimitrios wrote:
Specifically, where in the aparc.stats file (or other file) is the cortical surface area? I only see default output for 'WhiteSurfArea'.
Jim
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve Sent: Thursday, October 12, 2017 4:16 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] cortical surface area
mm2
On 10/12/2017 02:15 PM, Alexopoulos, Dimitrios wrote:
What measure is for the cortical surface area?
The measure in the aparc.stats file states 'WhiteSurfArea'
Jim
--
The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
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that is the area of the white matter surface in mm2
On 10/12/17 2:15 PM, Alexopoulos, Dimitrios wrote:
What measure is for the cortical surface area?
The measure in the aparc.stats file states ‘WhiteSurfArea’
Jim
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Alexopoulos, Dimitrios -
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Douglas N Greve