Apologies for delayed response--here is the full terminal output. (error in bold)

-------------------------------------------------------------- selxavg3-sess logfile is /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/scripts/glm/log/selxavg3-sess-bold-glm_double_all_ps_0-170417150715.log -------------------------------------------------------------- preproc-sess -s 170322_xu_binding01_sub01 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -a glm_double_all_ps_0 -nolog -------------------------------------------------------------- preproc-sess logfile is /dev/null -------------------------------------------------------------- $Id: preproc-sess,v 1.45.2.3 2013/01/22 22:09:10 greve Exp $ jtaylor setenv FREESURFER_HOME /ncf/nrg/sw/apps/freesurfer/5.3.0 setenv SUBJECTS_DIR /ncf/vcn/jtaylor/mri-space/subjects Linux ncf2705.rc.fas.harvard.edu 2.6.32-642.6.2.el6.x86_64 #1 SMP Wed Oct 26 06:52:09 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/scripts/glm /ncf/vcn/jtaylor/programs/batch_edits/preproc-sess -s 170322_xu_binding01_sub01 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -a glm_double_all_ps_0 -nolog Mon Apr 17 15:07:18 EDT 2017 instem f mc 1 f fmc stc 0 fmc sm 0 fmc mask 1 brain 170322_xu_binding01_sub01 Template ----------------------------- mktemplate-sess -s 170322_xu_binding01_sub01 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -fsd bold -rlf runlist_double.txt -nolog -update

Session: /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170322_xu_binding01_sub01 ---------------- Mon Apr 17 15:07:18 EDT 2017 Detected input format at nii.gz 170322_xu_binding01_sub01 Update not needed Run: 008 ---------------- Mon Apr 17 15:07:19 EDT 2017 170322_xu_binding01_sub01 008 Update not needed Run: 010 ---------------- Mon Apr 17 15:07:19 EDT 2017 170322_xu_binding01_sub01 010 Update not needed Run: 012 ---------------- Mon Apr 17 15:07:19 EDT 2017 170322_xu_binding01_sub01 012 Update not needed Run: 020 ---------------- Mon Apr 17 15:07:19 EDT 2017 170322_xu_binding01_sub01 020 Update not needed Run: 022 ---------------- Mon Apr 17 15:07:19 EDT 2017 170322_xu_binding01_sub01 022 Update not needed Run: 024 ---------------- Mon Apr 17 15:07:19 EDT 2017 170322_xu_binding01_sub01 024 Update not needed Run: 034 ---------------- Mon Apr 17 15:07:19 EDT 2017 170322_xu_binding01_sub01 034 Update not needed Run: 036 ---------------- Mon Apr 17 15:07:19 EDT 2017 170322_xu_binding01_sub01 036 Update not needed Run: 038 ---------------- Mon Apr 17 15:07:19 EDT 2017 170322_xu_binding01_sub01 038 Update not needed Run: 046 ---------------- Mon Apr 17 15:07:19 EDT 2017 170322_xu_binding01_sub01 046 Update not needed Run: 048 ---------------- Mon Apr 17 15:07:19 EDT 2017 170322_xu_binding01_sub01 048 Update not needed Run: 050 ---------------- Mon Apr 17 15:07:19 EDT 2017 170322_xu_binding01_sub01 050 Update not needed Mon Apr 17 15:07:19 EDT 2017 mktemplate-sess completed 170322_xu_binding01_sub01 Mask ------------------------ mkbrainmask-sess -maskstem brain -fsd bold -s 170322_xu_binding01_sub01 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -rlf runlist_double.txt -nolog -update ------------------------------------------------ /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170322_xu_binding01_sub01

Mon Apr 17 15:07:19 EDT 2017 170322_xu_binding01_sub01 Update not needed for session-level mask 170322_xu_binding01_sub01 Update not needed for run 008 mask 170322_xu_binding01_sub01 Update not needed for run 008 meanval 170322_xu_binding01_sub01 Update not needed for run 010 mask 170322_xu_binding01_sub01 Update not needed for run 010 meanval 170322_xu_binding01_sub01 Update not needed for run 012 mask 170322_xu_binding01_sub01 Update not needed for run 012 meanval 170322_xu_binding01_sub01 Update not needed for run 020 mask 170322_xu_binding01_sub01 Update not needed for run 020 meanval 170322_xu_binding01_sub01 Update not needed for run 022 mask 170322_xu_binding01_sub01 Update not needed for run 022 meanval 170322_xu_binding01_sub01 Update not needed for run 024 mask 170322_xu_binding01_sub01 Update not needed for run 024 meanval 170322_xu_binding01_sub01 Update not needed for run 034 mask 170322_xu_binding01_sub01 Update not needed for run 034 meanval 170322_xu_binding01_sub01 Update not needed for run 036 mask 170322_xu_binding01_sub01 Update not needed for run 036 meanval 170322_xu_binding01_sub01 Update not needed for run 038 mask 170322_xu_binding01_sub01 Update not needed for run 038 meanval 170322_xu_binding01_sub01 Update not needed for run 046 mask 170322_xu_binding01_sub01 Update not needed for run 046 meanval 170322_xu_binding01_sub01 Update not needed for run 048 mask 170322_xu_binding01_sub01 Update not needed for run 048 meanval 170322_xu_binding01_sub01 Update not needed for run 050 mask 170322_xu_binding01_sub01 Update not needed for run 050 meanval Mon Apr 17 15:07:21 EDT 2017 mkbrainmask-sess done 170322_xu_binding01_sub01 Registration ----------------------------- register-sess -s 170322_xu_binding01_sub01 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -fsd bold -dof 6 -rlf runlist_double.txt -per-session -nolog -update -------------------------------------------------------------- register-sess logfile is /dev/null -------------------------------------------------------------- Mon Apr 17 15:07:22 EDT 2017

setenv SUBJECTS_DIR /ncf/vcn/jtaylor/mri-space/subjects cd /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/scripts/glm /ncf/nrg/sw/apps/freesurfer/5.3.0/fsfast/bin/register-sess -s 170322_xu_binding01_sub01 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -fsd bold -dof 6 -rlf runlist_double.txt -per-session -nolog -update

freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 Linux ncf2705.rc.fas.harvard.edu 2.6.32-642.6.2.el6.x86_64 #1 SMP Wed Oct 26 06:52:09 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux

Session: /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170322_xu_binding01_sub01 ---------------- Mon Apr 17 15:07:22 EDT 2017 /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170322_xu_binding01_sub01 Mon Apr 17 15:07:22 EDT 2017 register-sess completed 170322_xu_binding01_sub01 MC ----------------------------- mc-sess -fstem f -fmcstem fmc -s 170322_xu_binding01_sub01 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -fsd bold -rlf runlist_double.txt -per-session -nolog -update Logfile is /dev/null ------------------------------------------- /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170322_xu_binding01_sub01

RunList: 008 010 012 020 022 024 034 036 038 046 048 050 170322_xu_binding01_sub01 008 Update not needed 170322_xu_binding01_sub01 010 Update not needed 170322_xu_binding01_sub01 012 Update not needed 170322_xu_binding01_sub01 020 Update not needed 170322_xu_binding01_sub01 022 Update not needed 170322_xu_binding01_sub01 024 Update not needed 170322_xu_binding01_sub01 034 Update not needed 170322_xu_binding01_sub01 036 Update not needed 170322_xu_binding01_sub01 038 Update not needed 170322_xu_binding01_sub01 046 Update not needed 170322_xu_binding01_sub01 048 Update not needed 170322_xu_binding01_sub01 050 Update not needed

Mon Apr 17 15:07:22 EDT 2017 mc-sess completed SUCCESSFULLY ---------------------------------------- Started at Mon Apr 17 15:07:18 EDT 2017 Ended at Mon Apr 17 15:07:22 EDT 2017 preproc-sess done preproc-sess -s 170329_xu_binding01_sub02 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -a glm_double_all_ps_0 -nolog -------------------------------------------------------------- preproc-sess logfile is /dev/null -------------------------------------------------------------- $Id: preproc-sess,v 1.45.2.3 2013/01/22 22:09:10 greve Exp $ jtaylor setenv FREESURFER_HOME /ncf/nrg/sw/apps/freesurfer/5.3.0 setenv SUBJECTS_DIR /ncf/vcn/jtaylor/mri-space/subjects Linux ncf2705.rc.fas.harvard.edu 2.6.32-642.6.2.el6.x86_64 #1 SMP Wed Oct 26 06:52:09 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/scripts/glm /ncf/vcn/jtaylor/programs/batch_edits/preproc-sess -s 170329_xu_binding01_sub02 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -a glm_double_all_ps_0 -nolog Mon Apr 17 15:07:23 EDT 2017 instem f mc 1 f fmc stc 0 fmc sm 0 fmc mask 1 brain 170329_xu_binding01_sub02 Template ----------------------------- mktemplate-sess -s 170329_xu_binding01_sub02 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -fsd bold -rlf runlist_double.txt -nolog -update

Session: /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170329_xu_binding01_sub02 ---------------- Mon Apr 17 15:07:23 EDT 2017 Detected input format at nii.gz 170329_xu_binding01_sub02 Update not needed Run: 014 ---------------- Mon Apr 17 15:07:23 EDT 2017 170329_xu_binding01_sub02 014 Update not needed Run: 016 ---------------- Mon Apr 17 15:07:23 EDT 2017 170329_xu_binding01_sub02 016 Update not needed Run: 018 ---------------- Mon Apr 17 15:07:23 EDT 2017 170329_xu_binding01_sub02 018 Update not needed Run: 026 ---------------- Mon Apr 17 15:07:23 EDT 2017 170329_xu_binding01_sub02 026 Update not needed Run: 028 ---------------- Mon Apr 17 15:07:23 EDT 2017 170329_xu_binding01_sub02 028 Update not needed Run: 030 ---------------- Mon Apr 17 15:07:24 EDT 2017 170329_xu_binding01_sub02 030 Update not needed Run: 040 ---------------- Mon Apr 17 15:07:24 EDT 2017 170329_xu_binding01_sub02 040 Update not needed Run: 042 ---------------- Mon Apr 17 15:07:24 EDT 2017 170329_xu_binding01_sub02 042 Update not needed Run: 044 ---------------- Mon Apr 17 15:07:24 EDT 2017 170329_xu_binding01_sub02 044 Update not needed Run: 052 ---------------- Mon Apr 17 15:07:24 EDT 2017 170329_xu_binding01_sub02 052 Update not needed Run: 054 ---------------- Mon Apr 17 15:07:24 EDT 2017 170329_xu_binding01_sub02 054 Update not needed Run: 056 ---------------- Mon Apr 17 15:07:24 EDT 2017 170329_xu_binding01_sub02 056 Update not needed Mon Apr 17 15:07:24 EDT 2017 mktemplate-sess completed 170329_xu_binding01_sub02 Mask ------------------------ mkbrainmask-sess -maskstem brain -fsd bold -s 170329_xu_binding01_sub02 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -rlf runlist_double.txt -nolog -update ------------------------------------------------ /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170329_xu_binding01_sub02

Mon Apr 17 15:07:24 EDT 2017 170329_xu_binding01_sub02 Update not needed for session-level mask 170329_xu_binding01_sub02 Update not needed for run 014 mask 170329_xu_binding01_sub02 Update not needed for run 014 meanval 170329_xu_binding01_sub02 Update not needed for run 016 mask 170329_xu_binding01_sub02 Update not needed for run 016 meanval 170329_xu_binding01_sub02 Update not needed for run 018 mask 170329_xu_binding01_sub02 Update not needed for run 018 meanval 170329_xu_binding01_sub02 Update not needed for run 026 mask 170329_xu_binding01_sub02 Update not needed for run 026 meanval 170329_xu_binding01_sub02 Update not needed for run 028 mask 170329_xu_binding01_sub02 Update not needed for run 028 meanval 170329_xu_binding01_sub02 Update not needed for run 030 mask 170329_xu_binding01_sub02 Update not needed for run 030 meanval 170329_xu_binding01_sub02 Update not needed for run 040 mask 170329_xu_binding01_sub02 Update not needed for run 040 meanval 170329_xu_binding01_sub02 Update not needed for run 042 mask 170329_xu_binding01_sub02 Update not needed for run 042 meanval 170329_xu_binding01_sub02 Update not needed for run 044 mask 170329_xu_binding01_sub02 Update not needed for run 044 meanval 170329_xu_binding01_sub02 Update not needed for run 052 mask 170329_xu_binding01_sub02 Update not needed for run 052 meanval 170329_xu_binding01_sub02 Update not needed for run 054 mask 170329_xu_binding01_sub02 Update not needed for run 054 meanval 170329_xu_binding01_sub02 Update not needed for run 056 mask 170329_xu_binding01_sub02 Update not needed for run 056 meanval Mon Apr 17 15:07:27 EDT 2017 mkbrainmask-sess done 170329_xu_binding01_sub02 Registration ----------------------------- register-sess -s 170329_xu_binding01_sub02 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -fsd bold -dof 6 -rlf runlist_double.txt -per-session -nolog -update -------------------------------------------------------------- register-sess logfile is /dev/null -------------------------------------------------------------- Mon Apr 17 15:07:27 EDT 2017

setenv SUBJECTS_DIR /ncf/vcn/jtaylor/mri-space/subjects cd /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/scripts/glm /ncf/nrg/sw/apps/freesurfer/5.3.0/fsfast/bin/register-sess -s 170329_xu_binding01_sub02 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -fsd bold -dof 6 -rlf runlist_double.txt -per-session -nolog -update

freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 Linux ncf2705.rc.fas.harvard.edu 2.6.32-642.6.2.el6.x86_64 #1 SMP Wed Oct 26 06:52:09 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux

Session: /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170329_xu_binding01_sub02 ---------------- Mon Apr 17 15:07:27 EDT 2017 /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170329_xu_binding01_sub02 Mon Apr 17 15:07:27 EDT 2017 register-sess completed 170329_xu_binding01_sub02 MC ----------------------------- mc-sess -fstem f -fmcstem fmc -s 170329_xu_binding01_sub02 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -fsd bold -rlf runlist_double.txt -per-session -nolog -update Logfile is /dev/null ------------------------------------------- /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170329_xu_binding01_sub02

RunList: 014 016 018 026 028 030 040 042 044 052 054 056 170329_xu_binding01_sub02 014 Update not needed 170329_xu_binding01_sub02 016 Update not needed 170329_xu_binding01_sub02 018 Update not needed 170329_xu_binding01_sub02 026 Update not needed 170329_xu_binding01_sub02 028 Update not needed 170329_xu_binding01_sub02 030 Update not needed 170329_xu_binding01_sub02 040 Update not needed 170329_xu_binding01_sub02 042 Update not needed 170329_xu_binding01_sub02 044 Update not needed 170329_xu_binding01_sub02 052 Update not needed 170329_xu_binding01_sub02 054 Update not needed 170329_xu_binding01_sub02 056 Update not needed

Mon Apr 17 15:07:28 EDT 2017 mc-sess completed SUCCESSFULLY ---------------------------------------- Started at Mon Apr 17 15:07:23 EDT 2017 Ended at Mon Apr 17 15:07:28 EDT 2017 preproc-sess done preproc-sess -s 170402_xu_binding01_sub03 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -a glm_double_all_ps_0 -nolog -------------------------------------------------------------- preproc-sess logfile is /dev/null -------------------------------------------------------------- $Id: preproc-sess,v 1.45.2.3 2013/01/22 22:09:10 greve Exp $ jtaylor setenv FREESURFER_HOME /ncf/nrg/sw/apps/freesurfer/5.3.0 setenv SUBJECTS_DIR /ncf/vcn/jtaylor/mri-space/subjects Linux ncf2705.rc.fas.harvard.edu 2.6.32-642.6.2.el6.x86_64 #1 SMP Wed Oct 26 06:52:09 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/scripts/glm /ncf/vcn/jtaylor/programs/batch_edits/preproc-sess -s 170402_xu_binding01_sub03 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -a glm_double_all_ps_0 -nolog Mon Apr 17 15:07:28 EDT 2017 instem f mc 1 f fmc stc 0 fmc sm 0 fmc mask 1 brain 170402_xu_binding01_sub03 Template ----------------------------- mktemplate-sess -s 170402_xu_binding01_sub03 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -fsd bold -rlf runlist_double.txt -nolog -update

Session: /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170402_xu_binding01_sub03 ---------------- Mon Apr 17 15:07:29 EDT 2017 Detected input format at nii.gz 170402_xu_binding01_sub03 Update not needed Run: 008 ---------------- Mon Apr 17 15:07:29 EDT 2017 170402_xu_binding01_sub03 008 Update not needed Run: 010 ---------------- Mon Apr 17 15:07:29 EDT 2017 170402_xu_binding01_sub03 010 Update not needed Run: 012 ---------------- Mon Apr 17 15:07:29 EDT 2017 170402_xu_binding01_sub03 012 Update not needed Run: 020 ---------------- Mon Apr 17 15:07:29 EDT 2017 170402_xu_binding01_sub03 020 Update not needed Run: 022 ---------------- Mon Apr 17 15:07:29 EDT 2017 170402_xu_binding01_sub03 022 Update not needed Run: 024 ---------------- Mon Apr 17 15:07:29 EDT 2017 170402_xu_binding01_sub03 024 Update not needed Run: 034 ---------------- Mon Apr 17 15:07:29 EDT 2017 170402_xu_binding01_sub03 034 Update not needed Run: 036 ---------------- Mon Apr 17 15:07:29 EDT 2017 170402_xu_binding01_sub03 036 Update not needed Run: 038 ---------------- Mon Apr 17 15:07:29 EDT 2017 170402_xu_binding01_sub03 038 Update not needed Run: 046 ---------------- Mon Apr 17 15:07:29 EDT 2017 170402_xu_binding01_sub03 046 Update not needed Run: 048 ---------------- Mon Apr 17 15:07:29 EDT 2017 170402_xu_binding01_sub03 048 Update not needed Run: 050 ---------------- Mon Apr 17 15:07:29 EDT 2017 170402_xu_binding01_sub03 050 Update not needed Mon Apr 17 15:07:29 EDT 2017 mktemplate-sess completed 170402_xu_binding01_sub03 Mask ------------------------ mkbrainmask-sess -maskstem brain -fsd bold -s 170402_xu_binding01_sub03 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -rlf runlist_double.txt -nolog -update ------------------------------------------------ /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170402_xu_binding01_sub03

Mon Apr 17 15:07:29 EDT 2017 170402_xu_binding01_sub03 Update not needed for session-level mask 170402_xu_binding01_sub03 Update not needed for run 008 mask 170402_xu_binding01_sub03 Update not needed for run 008 meanval 170402_xu_binding01_sub03 Update not needed for run 010 mask 170402_xu_binding01_sub03 Update not needed for run 010 meanval 170402_xu_binding01_sub03 Update not needed for run 012 mask 170402_xu_binding01_sub03 Update not needed for run 012 meanval 170402_xu_binding01_sub03 Update not needed for run 020 mask 170402_xu_binding01_sub03 Update not needed for run 020 meanval 170402_xu_binding01_sub03 Update not needed for run 022 mask 170402_xu_binding01_sub03 Update not needed for run 022 meanval 170402_xu_binding01_sub03 Update not needed for run 024 mask 170402_xu_binding01_sub03 Update not needed for run 024 meanval 170402_xu_binding01_sub03 Update not needed for run 034 mask 170402_xu_binding01_sub03 Update not needed for run 034 meanval 170402_xu_binding01_sub03 Update not needed for run 036 mask 170402_xu_binding01_sub03 Update not needed for run 036 meanval 170402_xu_binding01_sub03 Update not needed for run 038 mask 170402_xu_binding01_sub03 Update not needed for run 038 meanval 170402_xu_binding01_sub03 Update not needed for run 046 mask 170402_xu_binding01_sub03 Update not needed for run 046 meanval 170402_xu_binding01_sub03 Update not needed for run 048 mask 170402_xu_binding01_sub03 Update not needed for run 048 meanval 170402_xu_binding01_sub03 Update not needed for run 050 mask 170402_xu_binding01_sub03 Update not needed for run 050 meanval Mon Apr 17 15:07:32 EDT 2017 mkbrainmask-sess done 170402_xu_binding01_sub03 Registration ----------------------------- register-sess -s 170402_xu_binding01_sub03 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -fsd bold -dof 6 -rlf runlist_double.txt -per-session -nolog -update -------------------------------------------------------------- register-sess logfile is /dev/null -------------------------------------------------------------- Mon Apr 17 15:07:32 EDT 2017

setenv SUBJECTS_DIR /ncf/vcn/jtaylor/mri-space/subjects cd /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/scripts/glm /ncf/nrg/sw/apps/freesurfer/5.3.0/fsfast/bin/register-sess -s 170402_xu_binding01_sub03 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -fsd bold -dof 6 -rlf runlist_double.txt -per-session -nolog -update

freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 Linux ncf2705.rc.fas.harvard.edu 2.6.32-642.6.2.el6.x86_64 #1 SMP Wed Oct 26 06:52:09 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux

Session: /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170402_xu_binding01_sub03 ---------------- Mon Apr 17 15:07:32 EDT 2017 /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170402_xu_binding01_sub03 Mon Apr 17 15:07:32 EDT 2017 register-sess completed 170402_xu_binding01_sub03 MC ----------------------------- mc-sess -fstem f -fmcstem fmc -s 170402_xu_binding01_sub03 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -fsd bold -rlf runlist_double.txt -per-session -nolog -update Logfile is /dev/null ------------------------------------------- /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170402_xu_binding01_sub03

RunList: 008 010 012 020 022 024 034 036 038 046 048 050 170402_xu_binding01_sub03 008 Update not needed 170402_xu_binding01_sub03 010 Update not needed 170402_xu_binding01_sub03 012 Update not needed 170402_xu_binding01_sub03 020 Update not needed 170402_xu_binding01_sub03 022 Update not needed 170402_xu_binding01_sub03 024 Update not needed 170402_xu_binding01_sub03 034 Update not needed 170402_xu_binding01_sub03 036 Update not needed 170402_xu_binding01_sub03 038 Update not needed 170402_xu_binding01_sub03 046 Update not needed 170402_xu_binding01_sub03 048 Update not needed 170402_xu_binding01_sub03 050 Update not needed

Mon Apr 17 15:07:33 EDT 2017 mc-sess completed SUCCESSFULLY ---------------------------------------- Started at Mon Apr 17 15:07:28 EDT 2017 Ended at Mon Apr 17 15:07:33 EDT 2017 preproc-sess done preproc-sess -s 170402_xu_binding01_sub04 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -a glm_double_all_ps_0 -nolog -------------------------------------------------------------- preproc-sess logfile is /dev/null -------------------------------------------------------------- $Id: preproc-sess,v 1.45.2.3 2013/01/22 22:09:10 greve Exp $ jtaylor setenv FREESURFER_HOME /ncf/nrg/sw/apps/freesurfer/5.3.0 setenv SUBJECTS_DIR /ncf/vcn/jtaylor/mri-space/subjects Linux ncf2705.rc.fas.harvard.edu 2.6.32-642.6.2.el6.x86_64 #1 SMP Wed Oct 26 06:52:09 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/scripts/glm /ncf/vcn/jtaylor/programs/batch_edits/preproc-sess -s 170402_xu_binding01_sub04 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -a glm_double_all_ps_0 -nolog Mon Apr 17 15:07:33 EDT 2017 instem f mc 1 f fmc stc 0 fmc sm 0 fmc mask 1 brain 170402_xu_binding01_sub04 Template ----------------------------- mktemplate-sess -s 170402_xu_binding01_sub04 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -fsd bold -rlf runlist_double.txt -nolog -update

Session: /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170402_xu_binding01_sub04 ---------------- Mon Apr 17 15:07:33 EDT 2017 Detected input format at nii.gz 170402_xu_binding01_sub04 Update not needed Run: 014 ---------------- Mon Apr 17 15:07:34 EDT 2017 170402_xu_binding01_sub04 014 Update not needed Run: 016 ---------------- Mon Apr 17 15:07:34 EDT 2017 170402_xu_binding01_sub04 016 Update not needed Run: 018 ---------------- Mon Apr 17 15:07:34 EDT 2017 170402_xu_binding01_sub04 018 Update not needed Run: 026 ---------------- Mon Apr 17 15:07:34 EDT 2017 170402_xu_binding01_sub04 026 Update not needed Run: 028 ---------------- Mon Apr 17 15:07:34 EDT 2017 170402_xu_binding01_sub04 028 Update not needed Run: 030 ---------------- Mon Apr 17 15:07:34 EDT 2017 170402_xu_binding01_sub04 030 Update not needed Run: 040 ---------------- Mon Apr 17 15:07:34 EDT 2017 170402_xu_binding01_sub04 040 Update not needed Run: 042 ---------------- Mon Apr 17 15:07:34 EDT 2017 170402_xu_binding01_sub04 042 Update not needed Run: 044 ---------------- Mon Apr 17 15:07:34 EDT 2017 170402_xu_binding01_sub04 044 Update not needed Run: 052 ---------------- Mon Apr 17 15:07:34 EDT 2017 170402_xu_binding01_sub04 052 Update not needed Run: 054 ---------------- Mon Apr 17 15:07:34 EDT 2017 170402_xu_binding01_sub04 054 Update not needed Run: 056 ---------------- Mon Apr 17 15:07:34 EDT 2017 170402_xu_binding01_sub04 056 Update not needed Mon Apr 17 15:07:34 EDT 2017 mktemplate-sess completed 170402_xu_binding01_sub04 Mask ------------------------ mkbrainmask-sess -maskstem brain -fsd bold -s 170402_xu_binding01_sub04 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -rlf runlist_double.txt -nolog -update ------------------------------------------------ /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170402_xu_binding01_sub04

Mon Apr 17 15:07:34 EDT 2017 170402_xu_binding01_sub04 Update not needed for session-level mask 170402_xu_binding01_sub04 Update not needed for run 014 mask 170402_xu_binding01_sub04 Update not needed for run 014 meanval 170402_xu_binding01_sub04 Update not needed for run 016 mask 170402_xu_binding01_sub04 Update not needed for run 016 meanval 170402_xu_binding01_sub04 Update not needed for run 018 mask 170402_xu_binding01_sub04 Update not needed for run 018 meanval 170402_xu_binding01_sub04 Update not needed for run 026 mask 170402_xu_binding01_sub04 Update not needed for run 026 meanval 170402_xu_binding01_sub04 Update not needed for run 028 mask 170402_xu_binding01_sub04 Update not needed for run 028 meanval 170402_xu_binding01_sub04 Update not needed for run 030 mask 170402_xu_binding01_sub04 Update not needed for run 030 meanval 170402_xu_binding01_sub04 Update not needed for run 040 mask 170402_xu_binding01_sub04 Update not needed for run 040 meanval 170402_xu_binding01_sub04 Update not needed for run 042 mask 170402_xu_binding01_sub04 Update not needed for run 042 meanval 170402_xu_binding01_sub04 Update not needed for run 044 mask 170402_xu_binding01_sub04 Update not needed for run 044 meanval 170402_xu_binding01_sub04 Update not needed for run 052 mask 170402_xu_binding01_sub04 Update not needed for run 052 meanval 170402_xu_binding01_sub04 Update not needed for run 054 mask 170402_xu_binding01_sub04 Update not needed for run 054 meanval 170402_xu_binding01_sub04 Update not needed for run 056 mask 170402_xu_binding01_sub04 Update not needed for run 056 meanval Mon Apr 17 15:07:36 EDT 2017 mkbrainmask-sess done 170402_xu_binding01_sub04 Registration ----------------------------- register-sess -s 170402_xu_binding01_sub04 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -fsd bold -dof 6 -rlf runlist_double.txt -per-session -nolog -update -------------------------------------------------------------- register-sess logfile is /dev/null -------------------------------------------------------------- Mon Apr 17 15:07:37 EDT 2017

setenv SUBJECTS_DIR /ncf/vcn/jtaylor/mri-space/subjects cd /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/scripts/glm /ncf/nrg/sw/apps/freesurfer/5.3.0/fsfast/bin/register-sess -s 170402_xu_binding01_sub04 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -fsd bold -dof 6 -rlf runlist_double.txt -per-session -nolog -update

freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 Linux ncf2705.rc.fas.harvard.edu 2.6.32-642.6.2.el6.x86_64 #1 SMP Wed Oct 26 06:52:09 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux

Session: /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170402_xu_binding01_sub04 ---------------- Mon Apr 17 15:07:37 EDT 2017 /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170402_xu_binding01_sub04 Mon Apr 17 15:07:37 EDT 2017 register-sess completed 170402_xu_binding01_sub04 MC ----------------------------- mc-sess -fstem f -fmcstem fmc -s 170402_xu_binding01_sub04 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -fsd bold -rlf runlist_double.txt -per-session -nolog -update Logfile is /dev/null ------------------------------------------- /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170402_xu_binding01_sub04

RunList: 014 016 018 026 028 030 040 042 044 052 054 056 170402_xu_binding01_sub04 014 Update not needed 170402_xu_binding01_sub04 016 Update not needed 170402_xu_binding01_sub04 018 Update not needed 170402_xu_binding01_sub04 026 Update not needed 170402_xu_binding01_sub04 028 Update not needed 170402_xu_binding01_sub04 030 Update not needed 170402_xu_binding01_sub04 040 Update not needed 170402_xu_binding01_sub04 042 Update not needed 170402_xu_binding01_sub04 044 Update not needed 170402_xu_binding01_sub04 052 Update not needed 170402_xu_binding01_sub04 054 Update not needed 170402_xu_binding01_sub04 056 Update not needed

Mon Apr 17 15:07:37 EDT 2017 mc-sess completed SUCCESSFULLY ---------------------------------------- Started at Mon Apr 17 15:07:33 EDT 2017 Ended at Mon Apr 17 15:07:37 EDT 2017 preproc-sess done preproc-sess -s 170412_xu_binding01_sub05 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -a glm_double_all_ps_0 -nolog -------------------------------------------------------------- preproc-sess logfile is /dev/null -------------------------------------------------------------- $Id: preproc-sess,v 1.45.2.3 2013/01/22 22:09:10 greve Exp $ jtaylor setenv FREESURFER_HOME /ncf/nrg/sw/apps/freesurfer/5.3.0 setenv SUBJECTS_DIR /ncf/vcn/jtaylor/mri-space/subjects Linux ncf2705.rc.fas.harvard.edu 2.6.32-642.6.2.el6.x86_64 #1 SMP Wed Oct 26 06:52:09 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/scripts/glm /ncf/vcn/jtaylor/programs/batch_edits/preproc-sess -s 170412_xu_binding01_sub05 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -a glm_double_all_ps_0 -nolog Mon Apr 17 15:07:38 EDT 2017 instem f mc 1 f fmc stc 0 fmc sm 0 fmc mask 1 brain 170412_xu_binding01_sub05 Template ----------------------------- mktemplate-sess -s 170412_xu_binding01_sub05 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -fsd bold -rlf runlist_double.txt -nolog -update

Session: /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170412_xu_binding01_sub05 ---------------- Mon Apr 17 15:07:38 EDT 2017 Detected input format at nii.gz 170412_xu_binding01_sub05 Update not needed Run: 008 ---------------- Mon Apr 17 15:07:38 EDT 2017 170412_xu_binding01_sub05 008 Update not needed Run: 010 ---------------- Mon Apr 17 15:07:38 EDT 2017 170412_xu_binding01_sub05 010 Update not needed Run: 012 ---------------- Mon Apr 17 15:07:38 EDT 2017 170412_xu_binding01_sub05 012 Update not needed Run: 020 ---------------- Mon Apr 17 15:07:38 EDT 2017 170412_xu_binding01_sub05 020 Update not needed Run: 022 ---------------- Mon Apr 17 15:07:38 EDT 2017 170412_xu_binding01_sub05 022 Update not needed Run: 024 ---------------- Mon Apr 17 15:07:38 EDT 2017 170412_xu_binding01_sub05 024 Update not needed Run: 034 ---------------- Mon Apr 17 15:07:38 EDT 2017 170412_xu_binding01_sub05 034 Update not needed Run: 036 ---------------- Mon Apr 17 15:07:39 EDT 2017 170412_xu_binding01_sub05 036 Update not needed Run: 038 ---------------- Mon Apr 17 15:07:39 EDT 2017 170412_xu_binding01_sub05 038 Update not needed Run: 046 ---------------- Mon Apr 17 15:07:39 EDT 2017 170412_xu_binding01_sub05 046 Update not needed Run: 048 ---------------- Mon Apr 17 15:07:39 EDT 2017 170412_xu_binding01_sub05 048 Update not needed Run: 050 ---------------- Mon Apr 17 15:07:39 EDT 2017 170412_xu_binding01_sub05 050 Update not needed Mon Apr 17 15:07:39 EDT 2017 mktemplate-sess completed 170412_xu_binding01_sub05 Mask ------------------------ mkbrainmask-sess -maskstem brain -fsd bold -s 170412_xu_binding01_sub05 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -rlf runlist_double.txt -nolog -update ------------------------------------------------ /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170412_xu_binding01_sub05

Mon Apr 17 15:07:39 EDT 2017 170412_xu_binding01_sub05 Update not needed for session-level mask 170412_xu_binding01_sub05 Update not needed for run 008 mask 170412_xu_binding01_sub05 Update not needed for run 008 meanval 170412_xu_binding01_sub05 Update not needed for run 010 mask 170412_xu_binding01_sub05 Update not needed for run 010 meanval 170412_xu_binding01_sub05 Update not needed for run 012 mask 170412_xu_binding01_sub05 Update not needed for run 012 meanval 170412_xu_binding01_sub05 Update not needed for run 020 mask 170412_xu_binding01_sub05 Update not needed for run 020 meanval 170412_xu_binding01_sub05 Update not needed for run 022 mask 170412_xu_binding01_sub05 Update not needed for run 022 meanval 170412_xu_binding01_sub05 Update not needed for run 024 mask 170412_xu_binding01_sub05 Update not needed for run 024 meanval 170412_xu_binding01_sub05 Update not needed for run 034 mask 170412_xu_binding01_sub05 Update not needed for run 034 meanval 170412_xu_binding01_sub05 Update not needed for run 036 mask 170412_xu_binding01_sub05 Update not needed for run 036 meanval 170412_xu_binding01_sub05 Update not needed for run 038 mask 170412_xu_binding01_sub05 Update not needed for run 038 meanval 170412_xu_binding01_sub05 Update not needed for run 046 mask 170412_xu_binding01_sub05 Update not needed for run 046 meanval 170412_xu_binding01_sub05 Update not needed for run 048 mask 170412_xu_binding01_sub05 Update not needed for run 048 meanval 170412_xu_binding01_sub05 Update not needed for run 050 mask 170412_xu_binding01_sub05 Update not needed for run 050 meanval Mon Apr 17 15:07:41 EDT 2017 mkbrainmask-sess done 170412_xu_binding01_sub05 Registration ----------------------------- register-sess -s 170412_xu_binding01_sub05 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -fsd bold -dof 6 -rlf runlist_double.txt -per-session -nolog -update -------------------------------------------------------------- register-sess logfile is /dev/null -------------------------------------------------------------- Mon Apr 17 15:07:41 EDT 2017

setenv SUBJECTS_DIR /ncf/vcn/jtaylor/mri-space/subjects cd /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/scripts/glm /ncf/nrg/sw/apps/freesurfer/5.3.0/fsfast/bin/register-sess -s 170412_xu_binding01_sub05 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -fsd bold -dof 6 -rlf runlist_double.txt -per-session -nolog -update

freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 Linux ncf2705.rc.fas.harvard.edu 2.6.32-642.6.2.el6.x86_64 #1 SMP Wed Oct 26 06:52:09 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux

Session: /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170412_xu_binding01_sub05 ---------------- Mon Apr 17 15:07:41 EDT 2017 /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170412_xu_binding01_sub05 Mon Apr 17 15:07:42 EDT 2017 register-sess completed 170412_xu_binding01_sub05 MC ----------------------------- mc-sess -fstem f -fmcstem fmc -s 170412_xu_binding01_sub05 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -fsd bold -rlf runlist_double.txt -per-session -nolog -update Logfile is /dev/null ------------------------------------------- /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170412_xu_binding01_sub05

RunList: 008 010 012 020 022 024 034 036 038 046 048 050 170412_xu_binding01_sub05 008 Update not needed 170412_xu_binding01_sub05 010 Update not needed 170412_xu_binding01_sub05 012 Update not needed 170412_xu_binding01_sub05 020 Update not needed 170412_xu_binding01_sub05 022 Update not needed 170412_xu_binding01_sub05 024 Update not needed 170412_xu_binding01_sub05 034 Update not needed 170412_xu_binding01_sub05 036 Update not needed 170412_xu_binding01_sub05 038 Update not needed 170412_xu_binding01_sub05 046 Update not needed 170412_xu_binding01_sub05 048 Update not needed 170412_xu_binding01_sub05 050 Update not needed

Mon Apr 17 15:07:42 EDT 2017 mc-sess completed SUCCESSFULLY ---------------------------------------- Started at Mon Apr 17 15:07:38 EDT 2017 Ended at Mon Apr 17 15:07:42 EDT 2017 preproc-sess done preproc-sess -s 170416_xu_binding01_sub06 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -a glm_double_all_ps_0 -nolog -------------------------------------------------------------- preproc-sess logfile is /dev/null -------------------------------------------------------------- $Id: preproc-sess,v 1.45.2.3 2013/01/22 22:09:10 greve Exp $ jtaylor setenv FREESURFER_HOME /ncf/nrg/sw/apps/freesurfer/5.3.0 setenv SUBJECTS_DIR /ncf/vcn/jtaylor/mri-space/subjects Linux ncf2705.rc.fas.harvard.edu 2.6.32-642.6.2.el6.x86_64 #1 SMP Wed Oct 26 06:52:09 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/scripts/glm /ncf/vcn/jtaylor/programs/batch_edits/preproc-sess -s 170416_xu_binding01_sub06 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -a glm_double_all_ps_0 -nolog Mon Apr 17 15:07:43 EDT 2017 instem f mc 1 f fmc stc 0 fmc sm 0 fmc mask 1 brain 170416_xu_binding01_sub06 Template ----------------------------- mktemplate-sess -s 170416_xu_binding01_sub06 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -fsd bold -rlf runlist_double.txt -nolog -update

Session: /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170416_xu_binding01_sub06 ---------------- Mon Apr 17 15:07:43 EDT 2017 Detected input format at nii.gz 170416_xu_binding01_sub06 Update not needed Run: 014 ---------------- Mon Apr 17 15:07:43 EDT 2017 170416_xu_binding01_sub06 014 Update not needed Run: 016 ---------------- Mon Apr 17 15:07:43 EDT 2017 170416_xu_binding01_sub06 016 Update not needed Run: 018 ---------------- Mon Apr 17 15:07:43 EDT 2017 170416_xu_binding01_sub06 018 Update not needed Run: 026 ---------------- Mon Apr 17 15:07:43 EDT 2017 170416_xu_binding01_sub06 026 Update not needed Run: 028 ---------------- Mon Apr 17 15:07:43 EDT 2017 170416_xu_binding01_sub06 028 Update not needed Run: 030 ---------------- Mon Apr 17 15:07:43 EDT 2017 170416_xu_binding01_sub06 030 Update not needed Run: 040 ---------------- Mon Apr 17 15:07:44 EDT 2017 170416_xu_binding01_sub06 040 Update not needed Run: 042 ---------------- Mon Apr 17 15:07:44 EDT 2017 170416_xu_binding01_sub06 042 Update not needed Run: 044 ---------------- Mon Apr 17 15:07:44 EDT 2017 170416_xu_binding01_sub06 044 Update not needed Run: 052 ---------------- Mon Apr 17 15:07:44 EDT 2017 170416_xu_binding01_sub06 052 Update not needed Run: 054 ---------------- Mon Apr 17 15:07:44 EDT 2017 170416_xu_binding01_sub06 054 Update not needed Run: 056 ---------------- Mon Apr 17 15:07:44 EDT 2017 170416_xu_binding01_sub06 056 Update not needed Mon Apr 17 15:07:44 EDT 2017 mktemplate-sess completed 170416_xu_binding01_sub06 Mask ------------------------ mkbrainmask-sess -maskstem brain -fsd bold -s 170416_xu_binding01_sub06 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -rlf runlist_double.txt -nolog -update ------------------------------------------------ /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170416_xu_binding01_sub06

Mon Apr 17 15:07:44 EDT 2017 170416_xu_binding01_sub06 Update not needed for session-level mask 170416_xu_binding01_sub06 Update not needed for run 014 mask 170416_xu_binding01_sub06 Update not needed for run 014 meanval 170416_xu_binding01_sub06 Update not needed for run 016 mask 170416_xu_binding01_sub06 Update not needed for run 016 meanval 170416_xu_binding01_sub06 Update not needed for run 018 mask 170416_xu_binding01_sub06 Update not needed for run 018 meanval 170416_xu_binding01_sub06 Update not needed for run 026 mask 170416_xu_binding01_sub06 Update not needed for run 026 meanval 170416_xu_binding01_sub06 Update not needed for run 028 mask 170416_xu_binding01_sub06 Update not needed for run 028 meanval 170416_xu_binding01_sub06 Update not needed for run 030 mask 170416_xu_binding01_sub06 Update not needed for run 030 meanval 170416_xu_binding01_sub06 Update not needed for run 040 mask 170416_xu_binding01_sub06 Update not needed for run 040 meanval 170416_xu_binding01_sub06 Update not needed for run 042 mask 170416_xu_binding01_sub06 Update not needed for run 042 meanval 170416_xu_binding01_sub06 Update not needed for run 044 mask 170416_xu_binding01_sub06 Update not needed for run 044 meanval 170416_xu_binding01_sub06 Update not needed for run 052 mask 170416_xu_binding01_sub06 Update not needed for run 052 meanval 170416_xu_binding01_sub06 Update not needed for run 054 mask 170416_xu_binding01_sub06 Update not needed for run 054 meanval 170416_xu_binding01_sub06 Update not needed for run 056 mask 170416_xu_binding01_sub06 Update not needed for run 056 meanval Mon Apr 17 15:07:47 EDT 2017 mkbrainmask-sess done 170416_xu_binding01_sub06 Registration ----------------------------- register-sess -s 170416_xu_binding01_sub06 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -fsd bold -dof 6 -rlf runlist_double.txt -per-session -nolog -update -------------------------------------------------------------- register-sess logfile is /dev/null -------------------------------------------------------------- Mon Apr 17 15:07:47 EDT 2017

setenv SUBJECTS_DIR /ncf/vcn/jtaylor/mri-space/subjects cd /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/scripts/glm /ncf/nrg/sw/apps/freesurfer/5.3.0/fsfast/bin/register-sess -s 170416_xu_binding01_sub06 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -fsd bold -dof 6 -rlf runlist_double.txt -per-session -nolog -update

freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 Linux ncf2705.rc.fas.harvard.edu 2.6.32-642.6.2.el6.x86_64 #1 SMP Wed Oct 26 06:52:09 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux

Session: /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170416_xu_binding01_sub06 ---------------- Mon Apr 17 15:07:47 EDT 2017 /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170416_xu_binding01_sub06 Mon Apr 17 15:07:47 EDT 2017 register-sess completed 170416_xu_binding01_sub06 MC ----------------------------- mc-sess -fstem f -fmcstem fmc -s 170416_xu_binding01_sub06 -d /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata -fsd bold -rlf runlist_double.txt -per-session -nolog -update Logfile is /dev/null ------------------------------------------- /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170416_xu_binding01_sub06

RunList: 014 016 018 026 028 030 040 042 044 052 054 056 170416_xu_binding01_sub06 014 Update not needed 170416_xu_binding01_sub06 016 Update not needed 170416_xu_binding01_sub06 018 Update not needed 170416_xu_binding01_sub06 026 Update not needed 170416_xu_binding01_sub06 028 Update not needed 170416_xu_binding01_sub06 030 Update not needed 170416_xu_binding01_sub06 040 Update not needed 170416_xu_binding01_sub06 042 Update not needed 170416_xu_binding01_sub06 044 Update not needed 170416_xu_binding01_sub06 052 Update not needed 170416_xu_binding01_sub06 054 Update not needed 170416_xu_binding01_sub06 056 Update not needed

Mon Apr 17 15:07:47 EDT 2017 mc-sess completed SUCCESSFULLY ---------------------------------------- Started at Mon Apr 17 15:07:43 EDT 2017 Ended at Mon Apr 17 15:07:47 EDT 2017 preproc-sess done ------------------------------------------- /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170322_xu_binding01_sub01

Mon Apr 17 15:07:48 EDT 2017 anadir = /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170322_xu_binding01_sub01/bold/glm_double_all_ps_0 *ERROR: cannot find /net/rcss11/srv/export/ncf_vcn/share_root/jtaylor/mri-space/studies/binding01/unpackdata/170322_xu_binding01_sub01/bold/008/fmc.sm0*

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Today's Topics:

1. postdoctoral Research Fellow position at Mayo Clinic (Senjem, Matthew L., M.S.)
2. First-level GLM on externally-preprocessed functionals (Christopher Markiewicz)
3. Re: Custom color maps (Senften, Peter)
4. Re: MRIread (load_nifti)- Out of memory (Bruce Fischl)
5. Re: long mri_ca_register error (Bruce Fischl)
6. Re: help (Bruce Fischl)
7. Re: MRIread (load_nifti)- Out of memory (Ilaria Sani)
8. Re: MRIread (load_nifti)- Out of memory (Douglas N Greve)
9. Re: QDEC-volume, thickness and area (Douglas N Greve)
10. Re: Help on "mris_anatomical_stats" (Douglas N Greve)
11. Re: First-level GLM on externally-preprocessed functionals (Douglas N Greve)
12. Re: Custom color maps (Douglas N Greve)
13. Re: Custom registration template (Douglas N Greve)
14. Re: Selxavg3-sess Looking for (and can't find) "fmc.sm0" (Douglas N Greve)
15. Re: Ventricle-to-Brain Ratio (Douglas N Greve)
16. Re: ROI seed size (Douglas N Greve)
17. Re: correlation coefficient R (Douglas N Greve)
18. Re: Custom color maps (Senften, Peter)
19. Re: General QDEC clarification queastions (Douglas N Greve)
20. QDEC and ROI drawing (Arnaud Bor?)
21. Re: QDEC and ROI drawing (Douglas N Greve)
22. Re: QDEC-volume, thickness and area (Lim, Lena)
23. Re: QDEC-volume, thickness and area (Douglas N Greve)
24. R: Re: R: R: Re: R: Re: Whole preprocessing with FAST without to perform a seed based analysis (stdp82@virgilio.it)
25. Re: R: Re: R: R: Re: R: Re: Whole preprocessing with FAST without to perform a seed based analysis (Douglas N Greve)
26. QDEC-Cortical Thickness (Limachia, Gaurang (NIH/NINDS) [F])
27. Re: Custom registration template (Linda Zhang)
28. Re: Ventricle-to-Brain Ratio (Gullickson, James)
29. Re: MRIread (load_nifti)- Out of memory (Ilaria Sani)
30. Re: long mri_ca_register error (Chris Adamson)
31. Re: help (Dilip Puri)
32. How to segment subnuclei of thalamus? (Shane S)
33. withdrawing from the mailing list. (kjunji@med.kanazawa-u.ac.jp)
34. Re: QA Tools v1.2 and future release (Yong Li)
35. Hippocampal subfield segmentation, file content (Nina Jacobsen)
36. Re: Multiple Comparisons Correction thresh error (teodora petrova)
37. Longitudinal Pipeline (Arman Eshaghi)
38. Re: Hippocampal subfield segmentation, file content (Iglesias Gonzalez, Eugenio)
39. Re: How to segment subnuclei of thalamus? (Bruce Fischl)
40. Analyzing xhemi results (Marissa Pifer)
41. Re: QDEC and ROI drawing (Arnaud Bor?)

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Message: 1 Date: Thu, 06 Apr 2017 16:17:30 +0000 From: "Senjem, Matthew L., M.S." Senjem.Matthew1@mayo.edu Subject: [Freesurfer] postdoctoral Research Fellow position at Mayo Clinic To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Message-ID: 47cabe$66564f@ironport10.mayo.edu Content-Type: text/plain; charset="windows-1252"

The Mayo Clinic Departments of Neurology and Diagnostic Radiology in Rochester, Minnesota are seeking applications for a fully-funded, two-year postdoctoral Research Fellow position to begin in July of 2017. The Research Fellow position will primarily work on developing advanced multi-modal molecular and high-field (3T and 7T) neuroimaging to study connectomics in pre-clinical and clinical Alzheimer?s disease. The resulting data will be acquired and analyzed as part of a unique collaboration between investigators at Mayo Clinic Alzheimer?s Disease Research Center and the Center for Magnetic Resonance Research at the University of Minnesota. Basic programing skills and familiarity with widely used neuroimaging software platforms are required for successful applicants. Familiarity with the Human Connectome Project imaging and analyses protocols is preferred but not required. No clinical or Alzheimer?s specific background is required. Salary will be commensurate with postdoctoral experience. The position will remain open until filled by a successful candidate.

Please send CV, three letters of recommendation, and any inquiries to:

David T. Jones, M.D. Mayo Clinic Department of Neurology Email: Jones.David@mayo.edumailto:Jones.David@mayo.edu

A Research Fellow at Mayo Clinic is a temporary position intended to provide training and education in research. Individuals will train in the research program of a Mayo Clinic principal investigator. Qualified individuals will demonstrate the potential for research as evidenced by their training and peer-reviewed publications and should become competitive for national research grants. Proof of English proficiency is required for J-1 Short-Term Scholars, Research Scholars, Professors, Specialists, and Student Interns sponsored by Mayo Clinic.

Why Mayo Clinic? Learn and grow among the best in your field at the nation?s top hospital (U.S. News & World Report, 2016-2017), ranked No. 1 in more specialties than any other care provider. Mayo Clinic is committed to sustaining and growing research, believes in research-driven care and establishes a well-defined integration between the clinical practice and research. At Mayo Clinic, you?ll use the power of collaboration to achieve the highest standards for medical care and health improvement, working in the largest integrated, not-for-profit medical group practice in the world with over 60,000 employees. You?re invited to contribute to a unique environment that brings together the best in patient care, groundbreaking research and innovative medical education. We offer exceptional benefits, and have been recognized by FORTUNE magazine as one of the top 100 ?Best Companies to Work For?.

Mayo Clinic is an equal opportunity educator and employer (including veterans and persons with disabilities).

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