Hi Tamara

you should look at the papers cited in the Neuron paper (the Caviness and Kenndy ones). They detail the manual labeling protocol that we inherit.

cheers Bruce On Tue, 25 Oct 2016, Tamara Tavares wrote:

Hello,

I am wondering where I find the protocol used to segment the ventricles for Freesurfer version 5.1. Looking at the citations in Fischl et al 2002, I have found some information regarding the segmentation of the surfaces and some subcortical areas but not the ventricles. I was hoping to compare the segmentation protocol Freesurfer uses with another program.

Thank you in advance for your help! Tamara