Hello, I have a high resolution image covering the back third of the brain obtained from surface coils and wm fill fails, it tells me that it doesn't find the corpus callosum. This makes sense because it is not a full brain. But I was wondering if there was a way around this and have the program continue to make progress rather than fail and stop. Thanks for the help! Akram.
Hi Akram,
One possible way is to manually set the Seed points for corpus callosum etc using the -C, -P, -lh, and -rh options of mri_fill.
Note that these coordinates must be in the Talairach space.
-Xiao
On Mon, 23 May 2005, Bakkour, Akram wrote:
Hello, I have a high resolution image covering the back third of the brain obtained from surface coils and wm fill fails, it tells me that it doesn't find the corpus callosum. This makes sense because it is not a full brain. But I was wondering if there was a way around this and have the program continue to make progress rather than fail and stop. Thanks for the help! Akram.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Akram,
if you don't have good enough CNR throughout the cortex you won't be able to generate a cortical model.
Bruce
On Mon, 23 May 2005, Bakkour, Akram wrote:
Hello, I have a high resolution image covering the back third of the brain obtained from surface coils and wm fill fails, it tells me that it doesn't find the corpus callosum. This makes sense because it is not a full brain. But I was wondering if there was a way around this and have the program continue to make progress rather than fail and stop. Thanks for the help! Akram.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Bakkour, Akram -
Bruce Fischl -
Xiao Han