You can run FDG like mri_fdr --i contrast/sig.mgh --fdr FDRVALUE where you set your desired FDRVALUE This will print out a threshold. You can then apply that threshold to your table

On 11/8/19 6:57 AM, Benjamin Ineichen wrote:

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Dear Freesurfer experts,

I run the command mri_glmfit --table aseg.volume.stats.dat --fsgd GLM7.fsgd dods --C contrasts6.mtx --glmdir NFL.aseg.glmdir This gave me the output sig.table.dat. Is there a way to implement an FDR to this analysis in Freesurfer or do I have to use another statistical program for that? Many thanks for your support!

Best regards, Ben

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