Hi Irina

you need to load the overlay (file->load overlay or -overlay <fname> on the cmdline) and the curvature file (file->load curvature or just -sulc on the cmdline I think)

cheers Bruce On Tue, 14 May 2013, Irina Simanova wrote:

Dear freesurfer experts,

I am new to freesurfer and I want to project my single-subject MVPA (obtained in Matlab) results on a single-subject brain surface with curvature. I followed the steps from the tutorial:

• reconstructed individual subject's brain surface
• wrote my MVPA results map as a nifti image
• resampled the map onto the surface

Now I want to visualize it. The tutorial (http://ftp.nmr.mgh.harvard.edu/fswiki/FsTutorial/NavigateResampledParametric...) suggests to use qsurfer, however I don't seem to have this command. I tried to open the surface with tksurfer and then load the overlay, as described in the tutorial on visualization. However, when I open an inflated surface file, both buttons "show overlay" and "show curvature" are not active (though I have the .sulc file in the /surf). This is probably a very simple question, but I am stuck here. I would appreciate any advise on how to do the visualization: either from the command line or with tksurfer tools.

thank you, kind regards, Irina Simanova _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer