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Thanks, that's perfect.

Mark

____________________ Mark Wagshul, PhD Associate Professor Gruss Magnetic Resonance Research Center Albert Einstein College of Medicine Bronx, NY 10461

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Today's Topics:

1. Visualizing transparent surface with non transparent annotations (Leonardo Tozzi) 2. Failing to execute QDEC (vittal korann) 3. Re: different clusters in mri_surfcluster output versus viewing in Freeview (Huang, Yujing) 4. Re: segmenThalamicNuclei.sh exited with ERRORS (beh?et ayy?ld?z) 5. Re: Extracting brain volume seperately (Douglas N. Greve) 6. Re: Nuisance regressors (Douglas N. Greve) 7. Please unsubscribe me (Manuela Dorado Novoa) 8. Re: Hole in the insula (Douglas N. Greve) 9. Re: Correlating and/or linear regressing surface overlays (Douglas N. Greve) 10. Re: different clusters in mri_surfcluster output versus viewing in Freeview (Smith, Christine) 11. Re: mri_easyreg tool (Iglesias Gonzalez, Juan E.) 12. MGH35 template (Maffei, Chiara,PHD) 13. Re: [External] Re: 7.3.2-patch issues - thalamic segmentation (Kumar, Avnish) 14. Re: mri_robust_register --minsize (Reuter, Martin,Ph.D.) 15. Re: [External] Re: 7.3.2-patch issues - thalamic segmentation (Aaron Tanenbaum)

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Message: 1 Date: Wed, 22 Feb 2023 19:34:40 +0000 From: Leonardo Tozzi ltozzi@stanford.edu Subject: [Freesurfer] Visualizing transparent surface with non transparent annotations To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Message-ID: BYAPR02MB5352E6F3CF76C8B3FC793BD0A9AA9@BYAPR02MB5352.namprd02.prod.outlook.com

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Dear Experts,

I would like to use Freeview to achieve the following.

I would like to visualize a transparent brain surface, with only some annotations visible. In other words, I would like the surface to be transparent, but the annotations I choose to visualize to not be transparent.

Is there a way to achieve this?

Thank you,

Leonardo Tozzi, MD, PhD Director of Computational Neuroscience & Neuroimaging Program Stanford Center for Precision Mental Health and Wellness Stanford University ltozzi@stanford.edumailto:ltozzi@stanford.edu | (650) 5615738

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