Hi Doug, do you have a version of spatialsmooth-sess with the option to set mask file name? Thanks, Caspar
No, sorry. Why are you using such an old version? doug
On 1/9/14 5:26 PM, Caspar M. Schwiedrzik wrote:
Hi Doug, do you have a version of spatialsmooth-sess with the option to set mask file name? Thanks, Caspar
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Hi Doug, I found a way to build it in myself. I am using spatialsmooth-sess from v5.1. I need to smooth some functional data that I have preprocessed through some other program until this point. What should I be using instead of spatialsmooth-sess if I only want to smooth? Thanks, Caspar
On Thursday, January 9, 2014, Douglas Greve wrote:
No, sorry. Why are you using such an old version? doug
On 1/9/14 5:26 PM, Caspar M. Schwiedrzik wrote:
Hi Doug, do you have a version of spatialsmooth-sess with the option to set mask file name? Thanks, Caspar
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If you just want to sample your volume on the surface and smooth it there, use mri_vol2surf with --surf-fwhm. Send me your command line when you have one and I'll verify it is the right thing. doug
On 01/09/2014 10:21 PM, Caspar M. Schwiedrzik wrote:
Hi Doug, I found a way to build it in myself. I am using spatialsmooth-sess from v5.1. I need to smooth some functional data that I have preprocessed through some other program until this point. What should I be using instead of spatialsmooth-sess if I only want to smooth? Thanks, Caspar
On Thursday, January 9, 2014, Douglas Greve wrote:
No, sorry. Why are you using such an old version? doug On 1/9/14 5:26 PM, Caspar M. Schwiedrzik wrote:Hi Doug, do you have a version of spatialsmooth-sess with the option to set mask file name? Thanks, Caspar _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <javascript:_e({}, 'cvml', 'Freesurfer@nmr.mgh.harvard.edu');> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Doug, for this analysis, I would like to stay in volume space; the data are aligned to a primate volume template. I am trying to do a group analysis of the functional data as a next step (see this previous email: http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg33295.html). If I just want to smooth my data in volume space, is there a better option than spatialsmooth-sess in v5.1? Caspar
2014/1/10 Douglas N Greve greve@nmr.mgh.harvard.edu
If you just want to sample your volume on the surface and smooth it there, use mri_vol2surf with --surf-fwhm. Send me your command line when you have one and I'll verify it is the right thing. doug
On 01/09/2014 10:21 PM, Caspar M. Schwiedrzik wrote:
Hi Doug, I found a way to build it in myself. I am using spatialsmooth-sess from v5.1. I need to smooth some functional data that I have preprocessed through some other program until this point. What should I be using instead of spatialsmooth-sess if I only want to smooth? Thanks, Caspar
On Thursday, January 9, 2014, Douglas Greve wrote:
No, sorry. Why are you using such an old version? doug On 1/9/14 5:26 PM, Caspar M. Schwiedrzik wrote:Hi Doug, do you have a version of spatialsmooth-sess with the option to set mask file name? Thanks, Caspar _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <javascript:_e({}, 'cvml', 'Freesurfer@nmr.mgh.harvard.edu');> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
you mean just doing a simple volume smoothing? Just use mri_fwhm (make sure to use the --smooth-only option) doug
On 01/10/2014 01:27 PM, Caspar M. Schwiedrzik wrote:
Hi Doug, for this analysis, I would like to stay in volume space; the data are aligned to a primate volume template. I am trying to do a group analysis of the functional data as a next step (see this previous email: http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg33295.html). If I just want to smooth my data in volume space, is there a better option than spatialsmooth-sess in v5.1? Caspar
2014/1/10 Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu>
If you just want to sample your volume on the surface and smooth it there, use mri_vol2surf with --surf-fwhm. Send me your command line when you have one and I'll verify it is the right thing. doug On 01/09/2014 10:21 PM, Caspar M. Schwiedrzik wrote: Hi Doug, I found a way to build it in myself. I am using spatialsmooth-sess from v5.1. I need to smooth some functional data that I have preprocessed through some other program until this point. What should I be using instead of spatialsmooth-sess if I only want to smooth? Thanks, Caspar On Thursday, January 9, 2014, Douglas Greve wrote: No, sorry. Why are you using such an old version? doug On 1/9/14 5:26 PM, Caspar M. Schwiedrzik wrote: Hi Doug, do you have a version of spatialsmooth-sess with the option to set mask file name? Thanks, Caspar _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> <javascript:_e({}, 'cvml', 'Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>');> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> Phone Number: 617-724-2358 <tel:617-724-2358> Fax: 617-726-7422 <tel:617-726-7422> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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